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Series GSE179701 Query DataSets for GSE179701
Status Public on Mar 30, 2022
Title Insight into late synovial joint development by single cell transcriptomics in murine
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary we performed single cell RNA-Seq analysis of 2,267 cells from E17.5 murine knee joint. Using computational analytics and in situ hybridization, we identified five sub-populations contributing to joint constituents, and the underlying transcriptional networks, signaling, and core regulators involving in potential lineage transition during late joint developmental stage.
 
Overall design We sampled Gdf5-lineage cells of the murine knee at embryonic time points e17.5 and subjected it to single cell RNAseq analysis via 10x.
 
Contributor(s) Bian Q, Cahan P
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Submission date Jul 07, 2021
Last update date Mar 31, 2022
Contact name Qin Bian
Organization name Johns Hopkins University
Street address 733 N Broadway
City Baltimore
ZIP/Postal code 21205
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (1)
GSM5429626 e17_5
Relations
BioProject PRJNA744570
SRA SRP327417

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE179701_RAW.tar 196.2 Mb (http)(custom) TAR (of H5AD, TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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