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Series GSE180003 Query DataSets for GSE180003
Status Public on Jun 30, 2023
Title CHIP-seq analysis about H3K9me3 change after Zscan4 overexpression
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Transcription factor Zscan4 was newly discovered to be a marker of the intermediate state of 2-cell like cells . In addition, WGCNA discovered a strong positive correlation between the expression of Zscan4 and that of MT2/MERVL. Hence, we examined the possibility for Zscan4 as an activator of MT2/MERVL.
Overall design We overexpressed Zscan4 in J1. We performed CHIP-seq analysis in order to examine H3K9me3 change after Zscan4 overexpression
Contributor(s) Zhang W, Chen F, Zhao X, Lu X, Lu L
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Submission date Jul 13, 2021
Last update date Jun 30, 2023
Contact name Xuan Zhao
Phone 13780330130
Organization name Nankai University
Department State Key Laboratory of Medicinal Chemical Biology
Lab XinyiLu-Lab
Street address No. 38 Tongyan Road, Haihe Education Park, Tianjin
City Tianjin
State/province Tianjin
ZIP/Postal code 300000
Country China
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (4)
GSM5444712 Wildtype ESC input of H3K9me3
GSM5444713 Wildtype ESC IP of H3K9me3
GSM5444714 Zscan4 OE ESC input of H3K9me3
BioProject PRJNA746248
SRA SRP328162

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Supplementary file Size Download File type/resource 201.0 Mb (ftp)(http) BW 186.5 Mb (ftp)(http) BW
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