|
| Status |
Public on May 24, 2012 |
| Title |
cDNA microarray expression profile during fiber elongation between G. hirsutum and G. barbadense |
| Platform organism |
Gossypium hirsutum |
| Sample organisms |
Gossypium barbadense; Gossypium hirsutum |
| Experiment type |
Expression profiling by array
|
| Summary |
Sea-island cotton (Gossypium barbadense L.) has superior fiber quality properties such as length, fineness and strength, while Upland cotton (Gossypium hirsutum L.) is characterized by high yield. To reveal features of Upland cotton and Sea-island cotton fiber cells, differential genes expression profiles during fiber cell elongation and in secondary wall deposits were established using cDNA microarray technology. This research provides a valuable genomic resource to deepen our understanding of the molecular mechanisms of cotton fiber development, and may ultimately lead to improvements in cotton fiber quality and yield.
|
| |
|
| Overall design |
15 samples were prepared for microarray slides hybridized with three biological replicate samples including a swap-dye experiment for each growth stage. Each spot had a repeat in the microarray slideļ¼therefore, data for six replicate experiments performed with biologically independent samples.
|
| |
|
| Contributor(s) |
Zhang T, Chen X |
| Citation(s) |
22253876 |
| |
| Submission date |
Sep 09, 2009 |
| Last update date |
Sep 17, 2012 |
| Contact name |
Tianzhen Zhang |
| E-mail(s) |
cotton@njau.edu.cn
|
| Phone |
862584395307
|
| Fax |
862584395307
|
| Organization name |
National Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Research Institute
|
| Lab |
CRI NJAU
|
| Street address |
Weigang#1
|
| City |
Nanjing |
| State/province |
Jiangsu |
| ZIP/Postal code |
210095 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL2610 |
Upland Cotton Fiber-Specific cDNA Array |
|
| Samples (15)
|
| GSM450751 |
cDNA array TM-1/Hai7124 5 DPA ovule set1 |
| GSM450752 |
cDNA array TM-1/Hai7124 5 DPA ovule set2 |
| GSM450753 |
cDNA array TM-1/Hai7124 5 DPA ovule set3(dye-swap) |
| GSM450754 |
cDNA array TM-1/Hai7124 10 DPA fiber set1 |
| GSM450755 |
cDNA array TM-1/Hai7124 10 DPA fiber set2 |
| GSM450756 |
cDNA array TM-1/Hai7124 10 DPA fiber set3(dye-swap) |
| GSM450757 |
cDNA array TM-1/Hai7124 15 DPA fiber set1 |
| GSM450758 |
cDNA array TM-1/Hai7124 15 DPA fiber set2 |
| GSM450759 |
cDNA array TM-1/Hai7124 15 DPA fiber set3(dye-swap) |
| GSM450760 |
cDNA array TM-1/Hai7124 20 DPA fiber set1 |
| GSM450761 |
cDNA array TM-1/Hai7124 20 DPA fiber set2 |
| GSM450762 |
cDNA array TM-1/Hai7124 20 DPA fiber set3(dye-swap) |
| GSM450763 |
cDNA array TM-1/Hai7124 25 DPA fiber set1 |
| GSM450764 |
cDNA array TM-1/Hai7124 25 DPA fiber set2 |
| GSM450765 |
cDNA array TM-1/Hai7124 25 DPA fiber set3(dye-swap) |
|
| Relations |
| BioProject |
PRJNA119263 |
Less...
More...