|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Sep 12, 2009 |
Title |
Genome-wide transcriptome sequencing at different stages of Drosophila development, RNA-seq |
Project |
modENCODE
|
Organism |
Drosophila melanogaster |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains total RNA sequencing data generated on Solexa Genome Analyzer for whole Drosophila animals at 12 different time-points of development.
Keywords: Epigenetics
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
|
|
|
Overall design |
For each time-point (E-0-4h, E-4-8h, E-8-12h, E-12-16h, E-16-20h, E20-24h, L1, L2, L3, Pupae, Adult Males and Adult Females) a total RNA extraction has been performed. After conversion into double stranded DNA, the samples have been sequenced in duplicate on Solexa Genome Analyzer following Solexa sequencing procedure.
|
Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
|
|
|
Contributor(s) |
Negre N, Bild NA, White KP |
Citation missing |
Has this study been published? Please login to update or notify GEO. |
BioProject |
PRJNA168994 |
|
Submission date |
Sep 11, 2009 |
Last update date |
May 15, 2019 |
Contact name |
Kevin P. White |
E-mail(s) |
kpwhite@uchicago.edu
|
Organization name |
University of Chicago
|
Department |
Institute for Genomics and Systems Biology
|
Street address |
900 E. 57th STR. 10th FL.
|
City |
Chicago |
State/province |
IL |
ZIP/Postal code |
60615 |
Country |
USA |
|
|
Platforms (1) |
GPL9058 |
Illumina Genome Analyzer (Drosophila melanogaster) |
|
Samples (12)
|
|
This SubSeries is part of SuperSeries: |
GSE15292 |
Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq |
|
Relations |
SRA |
SRP001419 |
Supplementary file |
Size |
Download |
File type/resource |
GSE18068_RAW.tar |
413.3 Mb |
(http)(custom) |
TAR (of BED, BEDGRAPH) |
SRA Run Selector |
Processed data provided as supplementary file |
Raw data are available in SRA |
|
|
|
|
|