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Series GSE18068 Query DataSets for GSE18068
Status Public on Sep 12, 2009
Title Genome-wide transcriptome sequencing at different stages of Drosophila development, RNA-seq
Project modENCODE
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains total RNA sequencing data generated on Solexa Genome Analyzer for whole Drosophila animals at 12 different time-points of development.

Keywords: Epigenetics

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design For each time-point (E-0-4h, E-4-8h, E-8-12h, E-12-16h, E-16-20h, E20-24h, L1, L2, L3, Pupae, Adult Males and Adult Females) a total RNA extraction has been performed. After conversion into double stranded DNA, the samples have been sequenced in duplicate on Solexa Genome Analyzer following Solexa sequencing procedure.
Web link http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
 
Contributor(s) Negre N, Bild NA, White KP
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA168994
Submission date Sep 11, 2009
Last update date May 15, 2019
Contact name Kevin P. White
E-mail(s) kpwhite@uchicago.edu
Organization name University of Chicago
Department Institute for Genomics and Systems Biology
Street address 900 E. 57th STR. 10th FL.
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
 
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (12)
GSM451803 E12-16_combined_RNAseq_1, 2
GSM451804 AdultMale_combined_RNAseq_1, 2
GSM451805 AdultFemale_combined_RNAseq_1, 2
This SubSeries is part of SuperSeries:
GSE15292 Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq
Relations
SRA SRP001419

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE18068_RAW.tar 413.3 Mb (http)(custom) TAR (of BED, BEDGRAPH)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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