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Series GSE182707 Query DataSets for GSE182707
Status Public on Aug 25, 2021
Title DNA methylation profiles for the SIOP Ependymoma I Study
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary DNA methylation profiles were generated for cases in the SIOP ependymoma I study. Samples were analysed using the Illumina 450k BeadChip and processed using the Heidelberg classifier (v11.2b).
The aim of the biological studies aspect of the trial was to perform a retrospective analysis of the methylation profiles of the participants in the trial.
 
Overall design 35 samples were analysed and found to be consistent with ependymoma (74 participants in the study but the remainder did not have tissue available for analysis).
 
Contributor(s) Ritzmann TA, Chapman RJ, Kilday JP, Thorp N, Modena P, Dineen RA, Macarthur D, Mallucci C, Jaspan T, Pajtler KW, Giagnacovo M, Jacques TS, Paine SM, Ellison DW, Bouffet E, Grundy RG
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Submission date Aug 24, 2021
Last update date Sep 14, 2023
Contact name Timothy A Ritzmann
E-mail(s) Timothy.ritzmann@nhs.net
Organization name University of Nottingham
Department Children's Brain Tumour Research Centre
Street address Coates Road
City Nottingham
ZIP/Postal code NG7 2UH
Country United Kingdom
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (35)
GSM5534962 Human Ependymoma Tissue [EPEND163]
GSM5534963 Human Ependymoma Tissue [EPEND350]
GSM5534964 Human Ependymoma Tissue [EPEND297]
Relations
BioProject PRJNA757457

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE182707_RAW.tar 461.6 Mb (http)(custom) TAR (of IDAT)
GSE182707_beta_values.txt.gz 92.6 Mb (ftp)(http) TXT
GSE182707_unmethylated_methylated_signal_intensities.txt.gz 89.9 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record
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