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Series GSE182744 Query DataSets for GSE182744
Status Public on Jun 09, 2023
Title H3K79me3 and H3K79me2 in mESCs and preimplantation embryos
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary RNA-seq and ChIP-seq for H3K79me3 and H3K79me2 in mESCs and preimplantation embryos
Overall design H3K79me3 and H3K79me2 in mESCs and preimplantation embryos
Contributor(s) Lesch BJ, Malla AB, Yu H, Smith Z
Citation(s) 37317657
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 HD098128 Germline Utx mutation as a model for transgenerational epigenetic inheritance YALE UNIVERSITY Bluma J Lesch
Submission date Aug 25, 2021
Last update date Jun 21, 2023
Contact name Bluma J Lesch
Organization name Yale University
Department Genetics
Street address 333 Cedar Street
City New Haven
State/province CT
ZIP/Postal code 06525
Country USA
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (25)
GSM5535971 H3K79me2_ChIP_wt_rep1
GSM5535972 H3K79me2_input_wt_rep1
GSM5535973 H3K79me2_ChIP_wt_rep2
BioProject PRJNA757691
SRA SRP334061

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MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE182744_210820_Dot1LKO_mESCs_RNA_counts_summary.txt.gz 982.1 Kb (ftp)(http) TXT
GSE182744_210820_Dot1Li_embryo_RNA_counts_summary.txt.gz 191.3 Kb (ftp)(http) TXT
GSE182744_KO1_K79me2_peaks.bed.gz 561 b (ftp)(http) BED
GSE182744_KO1_K79me3_peaks.bed.gz 4.8 Kb (ftp)(http) BED
GSE182744_KO2_K79me2_peaks.bed.gz 444 b (ftp)(http) BED
GSE182744_KO2_K79me3_peaks.bed.gz 8.1 Kb (ftp)(http) BED
GSE182744_WT1_K79me2_peaks.bed.gz 1.2 Mb (ftp)(http) BED
GSE182744_WT1_K79me3_peaks.bed.gz 374.2 Kb (ftp)(http) BED
GSE182744_WT2_K79me2_peaks.bed.gz 1.1 Mb (ftp)(http) BED
GSE182744_WT2_K79me3_peaks.bed.gz 142.7 Kb (ftp)(http) BED
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Raw data are available in SRA
Processed data are available on Series record

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