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Series GSE183209 Query DataSets for GSE183209
Status Public on Feb 15, 2022
Title A GRAS family transcription factor negatively regulates cell division and positively affects cell size through SIM/SMR transcription
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Purpose: To elucidate the role of E1M and SNOS1 (transcription factors) during the process of G2/M phases of cell cycle.
Methods: We integrated ChIP-seq, Mnase-seq and ATACseq
Results: It showed that E1M associates with AP2-type transcription factor and E1M has an important role for determing final cell size and organ functions.
 
Overall design Analysis of E1M and SNOS1 target genes
 
Contributor(s) Huang Y, An J, Ito M, Benhamed M
Citation(s) 35351906
Submission date Sep 01, 2021
Last update date Apr 27, 2022
Contact name Jing An
Organization name Universite Paris Saclay
Street address 630 Rue Noetzlin
City Paris
ZIP/Postal code 91190
Country France
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (5)
GSM5553312 E1M-GFP rep1
GSM5553313 SNOS1-GFP rep1
GSM5553314 WT input rep1
Relations
BioProject PRJNA759614
SRA SRP335231

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183209_RAW.tar 195.2 Mb (http)(custom) TAR (of BW, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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