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Series GSE183281 Query DataSets for GSE183281
Status Public on Dec 14, 2022
Title PAX3-FOXO1 coordinates enhancer architecture, eRNA transcription, and controls RNA polymerase pause release at select gene targets
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Contributor(s) Hiebert SW, Stengel KR, Zhang S, Wang J, Liu Q, McDonald H, Bomber ML, Layden HM, Ellis J, Borinstein SC
Citation(s) 36395771
Submission date Sep 02, 2021
Last update date Dec 16, 2022
Contact name Susu Zhang
E-mail(s) susu.zhang@vanderbilt.edu
Organization name Vanderbilt University
Department Biochemistry
Lab Hiebert Lab
Street address 512 Preston Research Building
City Nashville
State/province TN
ZIP/Postal code 37232
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (209)
GSM5555051 6086-Rh30_PAX3-FOXO1-FKBP cells ATAC-seq_DMSO_rep1
GSM5555052 6086-Rh30_PAX3-FOXO1-FKBP cells ATAC-seq_DMSO_rep2
GSM5555053 6086-Rh30_PAX3-FOXO1-FKBP cells ATAC-seq_dTAG2hr_rep1
This SuperSeries is composed of the following SubSeries:
GSE183293 PAX3-FOXO1 coordinates enhancer architecture, eRNA transcription, and controls RNA polymerase pause release at select gene targets [ATAC-Seq]
GSE183294 PAX3-FOXO1 coordinates enhancer architecture, eRNA transcription, and controls RNA polymerase pause release at select gene targets [ChIP-Seq]
GSE183295 PAX3-FOXO1 coordinates enhancer architecture, eRNA transcription, and controls RNA polymerase pause release at select gene targets [Cut & Run]
Relations
BioProject PRJNA760325

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183281_RAW.tar 25.6 Gb (http)(custom) TAR (of BEDGRAPH, BW, NARROWPEAK, TXT)
SRA Run SelectorHelp

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