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Series GSE183420 Query DataSets for GSE183420
Status Public on Apr 30, 2023
Title Transcriptional repressor FOXD3 safeguards genome integrity in embryonic stem cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 37696959
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 GM125089 Iteratively redefining developmental potential through poised enhancers University of California San Francisco Robert Blelloch
Submission date Sep 03, 2021
Last update date Sep 12, 2023
Contact name Robert Blelloch
Organization name UCSF
Department Urology
Street address 35 Medical Center Way
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platforms (3)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
GPL28457 DNBSEQ-G400 (Mus musculus)
Samples (112)
GSM5557050 FOXD3-EtOH-8hpT-rep1
GSM5557051 FOXD3-4HT-8hpT-rep1
GSM5557052 FOXD3-EtOH-8hpT-rep2
This SuperSeries is composed of the following SubSeries:
GSE183416 Nascent RNA sequencing of FOXD3 KO and WT mouse ESCs
GSE183417 Characterization of cell cycle phase specific chromatin accessibility using ATAC seq after FOXD3 depletion
GSE183418 Genome-wide binding of FOXD3 in mouse ESCs
Relations
BioProject PRJNA760536

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183420_RAW.tar 2.1 Gb (http)(custom) TAR (of BW, H5, RDATA)
SRA Run SelectorHelp

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