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Series GSE18490 Query DataSets for GSE18490
Status Public on Dec 31, 2013
Title Whole genome transcriptional profile of human tissues and cells
Organism Homo sapiens
Experiment type Expression profiling by genome tiling array
Non-coding RNA profiling by genome tiling array
Summary We performed tiling array experiments to examine whole genome expression in human tissues. We investigated tissue specificity and association between evolutionary sequence conservation and transcription.

A total of 22 tissues (bone marrow, cerebellum, colon, cortex, fetal brain, heart, kidney, liver, lung, pancreas, prostate, salivary gland, skeletal muscle, small intestine, spinal cord, spleen, stomach, testes, thymus, thyroid, trachea and uterus) and 2 cell lines (HeLa and SH-SY5Y) were examined in 36783546 regions of the Human genome in this study.

Keywords: whole genome transcription, tiling array, non-coding transcripts, tissue specificity
Overall design Total RNA isolated from Human tissues and cell cultures were labeled and hybridized to the GeneChip Human Tiling 1.0R Array set of 14 chips (24 samples x 14 = 336 chips total) according to the manufacturer's protocol.
Contributor(s) Miya F, Kawaguchi T, Morizono T, Abe T, Fujimoto A, Johnson T, Nakamura Y, Tsunoda T
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Submission date Oct 09, 2009
Last update date Mar 25, 2019
Contact name Fuyuki Miya
Phone +81-3-5363-3890
Organization name Keio University
Department School of Medicine
Lab Center for Medical Genetics
Street address 35 Shinanomachi, Shinjuku-ku
City Tokyo
State/province Tokyo
ZIP/Postal code 160-8582
Country Japan
Platforms (15)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
GPL6156 [Hs35b_M01R] Affymetrix Human Tiling 1.0R Set, Array 1
GPL6157 [Hs35b_M02R] Affymetrix Human Tiling 1.0R Set, Array 2
Samples (360)
GSM460313 BoneMarrow_A
GSM460314 BoneMarrow_B
GSM460315 BoneMarrow_C
This SubSeries is part of SuperSeries:
GSE18676 Whole genome expression in human tissues
BioProject PRJNA123777

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE18490_BoneMarrow_normalized.txt.gz 288.4 Mb (ftp)(http) TXT
GSE18490_Cerebellum_normalized.txt.gz 289.1 Mb (ftp)(http) TXT
GSE18490_Colon_normalized.txt.gz 288.9 Mb (ftp)(http) TXT
GSE18490_Cortex_normalized.txt.gz 289.1 Mb (ftp)(http) TXT
GSE18490_FetalBrain_normalized.txt.gz 288.8 Mb (ftp)(http) TXT
GSE18490_HeLa_normalized.txt.gz 288.1 Mb (ftp)(http) TXT
GSE18490_Heart_normalized.txt.gz 287.9 Mb (ftp)(http) TXT
GSE18490_Kidney_normalized.txt.gz 288.8 Mb (ftp)(http) TXT
GSE18490_Liver_normalized.txt.gz 287.8 Mb (ftp)(http) TXT
GSE18490_Lung_normalized.txt.gz 289.1 Mb (ftp)(http) TXT
GSE18490_Pancreas_normalized.txt.gz 288.4 Mb (ftp)(http) TXT
GSE18490_Prostate_normalized.txt.gz 289.1 Mb (ftp)(http) TXT
GSE18490_RAW.tar 12.5 Gb (http)(custom) TAR (of CEL)
GSE18490_SHSY5Y_normalized.txt.gz 287.9 Mb (ftp)(http) TXT
GSE18490_SalivaryGland_normalized.txt.gz 287.9 Mb (ftp)(http) TXT
GSE18490_SkeletalMuscle_normalized.txt.gz 287.2 Mb (ftp)(http) TXT
GSE18490_SmallIntestine_normalized.txt.gz 288.3 Mb (ftp)(http) TXT
GSE18490_SpinalCord_normalized.txt.gz 289.3 Mb (ftp)(http) TXT
GSE18490_Spleen_normalized.txt.gz 289.1 Mb (ftp)(http) TXT
GSE18490_Stomach_normalized.txt.gz 289.2 Mb (ftp)(http) TXT
GSE18490_Testes_normalized.txt.gz 289.4 Mb (ftp)(http) TXT
GSE18490_Thymus_normalized.txt.gz 289.1 Mb (ftp)(http) TXT
GSE18490_Thyroid_normalized.txt.gz 289.0 Mb (ftp)(http) TXT
GSE18490_Trachea_normalized.txt.gz 288.7 Mb (ftp)(http) TXT
GSE18490_Uterus_normalized.txt.gz 288.9 Mb (ftp)(http) TXT
GSE18490_normalized_README.txt 1.8 Kb (ftp)(http) TXT
Processed data are available on Series record

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