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| Status |
Public on Dec 31, 2013 |
| Title |
Whole genome transcriptional profile of human tissues and cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by genome tiling array
Non-coding RNA profiling by genome tiling array
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| Summary |
We performed tiling array experiments to examine whole genome expression in human tissues. We investigated tissue specificity and association between evolutionary sequence conservation and transcription.
A total of 22 tissues (bone marrow, cerebellum, colon, cortex, fetal brain, heart, kidney, liver, lung, pancreas, prostate, salivary gland, skeletal muscle, small intestine, spinal cord, spleen, stomach, testes, thymus, thyroid, trachea and uterus) and 2 cell lines (HeLa and SH-SY5Y) were examined in 36783546 regions of the Human genome in this study.
Keywords: whole genome transcription, tiling array, non-coding transcripts, tissue specificity
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| Overall design |
Total RNA isolated from Human tissues and cell cultures were labeled and hybridized to the GeneChip Human Tiling 1.0R Array set of 14 chips (24 samples x 14 = 336 chips total) according to the manufacturer's protocol.
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| Contributor(s) |
Miya F, Kawaguchi T, Morizono T, Abe T, Fujimoto A, Johnson T, Nakamura Y, Tsunoda T |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Oct 09, 2009 |
| Last update date |
Mar 25, 2019 |
| Contact name |
Fuyuki Miya |
| E-mail(s) |
fmiya@keio.jp
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| Phone |
+81-3-5363-3890
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| Organization name |
Keio University
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| Department |
School of Medicine
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| Lab |
Center for Medical Genetics
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| Street address |
35 Shinanomachi, Shinjuku-ku
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| City |
Tokyo |
| State/province |
Tokyo |
| ZIP/Postal code |
160-8582 |
| Country |
Japan |
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| Platforms (15)
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| GPL570 |
[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array |
| GPL6156 |
[Hs35b_M01R] Affymetrix Human Tiling 1.0R Set, Array 1 |
| GPL6157 |
[Hs35b_M02R] Affymetrix Human Tiling 1.0R Set, Array 2 |
| GPL6158 |
[Hs35b_M03R] Affymetrix Human Tiling 1.0R Set, Array 3 |
| GPL6159 |
[Hs35b_M04R] Affymetrix Human Tiling 1.0R Set, Array 4 |
| GPL6160 |
[Hs35b_M05R] Affymetrix Human Tiling 1.0R Set, Array 5 |
| GPL6161 |
[Hs35b_M06R] Affymetrix Human Tiling 1.0R Set, Array 6 |
| GPL6162 |
[Hs35b_M07R] Affymetrix Human Tiling 1.0R Set, Array 7 |
| GPL6163 |
[Hs35b_M08R] Affymetrix Human Tiling 1.0R Set, Array 8 |
| GPL6164 |
[Hs35b_M09R] Affymetrix Human Tiling 1.0R Set, Array 9 |
| GPL6165 |
[Hs35b_M10R] Affymetrix Human Tiling 1.0R Set, Array 10 |
| GPL6166 |
[Hs35b_M11R] Affymetrix Human Tiling 1.0R Set, Array 11 |
| GPL6167 |
[Hs35b_M12R] Affymetrix Human Tiling 1.0R Set, Array 12 |
| GPL6168 |
[Hs35b_M13R] Affymetrix Human Tiling 1.0R Set, Array 13 |
| GPL6169 |
[Hs35b_M14R] Affymetrix Human Tiling 1.0R Set, Array 14 |
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| Samples (360)
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| This SubSeries is part of SuperSeries: |
| GSE18676 |
Whole genome expression in human tissues |
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| Relations |
| BioProject |
PRJNA123777 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE18490_BoneMarrow_normalized.txt.gz |
288.4 Mb |
(ftp)(http) |
TXT |
| GSE18490_Cerebellum_normalized.txt.gz |
289.1 Mb |
(ftp)(http) |
TXT |
| GSE18490_Colon_normalized.txt.gz |
288.9 Mb |
(ftp)(http) |
TXT |
| GSE18490_Cortex_normalized.txt.gz |
289.1 Mb |
(ftp)(http) |
TXT |
| GSE18490_FetalBrain_normalized.txt.gz |
288.8 Mb |
(ftp)(http) |
TXT |
| GSE18490_HeLa_normalized.txt.gz |
288.1 Mb |
(ftp)(http) |
TXT |
| GSE18490_Heart_normalized.txt.gz |
287.9 Mb |
(ftp)(http) |
TXT |
| GSE18490_Kidney_normalized.txt.gz |
288.8 Mb |
(ftp)(http) |
TXT |
| GSE18490_Liver_normalized.txt.gz |
287.8 Mb |
(ftp)(http) |
TXT |
| GSE18490_Lung_normalized.txt.gz |
289.1 Mb |
(ftp)(http) |
TXT |
| GSE18490_Pancreas_normalized.txt.gz |
288.4 Mb |
(ftp)(http) |
TXT |
| GSE18490_Prostate_normalized.txt.gz |
289.1 Mb |
(ftp)(http) |
TXT |
| GSE18490_RAW.tar |
12.5 Gb |
(http)(custom) |
TAR (of CEL) |
| GSE18490_SHSY5Y_normalized.txt.gz |
287.9 Mb |
(ftp)(http) |
TXT |
| GSE18490_SalivaryGland_normalized.txt.gz |
287.9 Mb |
(ftp)(http) |
TXT |
| GSE18490_SkeletalMuscle_normalized.txt.gz |
287.2 Mb |
(ftp)(http) |
TXT |
| GSE18490_SmallIntestine_normalized.txt.gz |
288.3 Mb |
(ftp)(http) |
TXT |
| GSE18490_SpinalCord_normalized.txt.gz |
289.3 Mb |
(ftp)(http) |
TXT |
| GSE18490_Spleen_normalized.txt.gz |
289.1 Mb |
(ftp)(http) |
TXT |
| GSE18490_Stomach_normalized.txt.gz |
289.2 Mb |
(ftp)(http) |
TXT |
| GSE18490_Testes_normalized.txt.gz |
289.4 Mb |
(ftp)(http) |
TXT |
| GSE18490_Thymus_normalized.txt.gz |
289.1 Mb |
(ftp)(http) |
TXT |
| GSE18490_Thyroid_normalized.txt.gz |
289.0 Mb |
(ftp)(http) |
TXT |
| GSE18490_Trachea_normalized.txt.gz |
288.7 Mb |
(ftp)(http) |
TXT |
| GSE18490_Uterus_normalized.txt.gz |
288.9 Mb |
(ftp)(http) |
TXT |
| GSE18490_normalized_README.txt |
1.8 Kb |
(ftp)(http) |
TXT |
| Processed data are available on Series record |
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