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Series GSE185017 Query DataSets for GSE185017
Status Public on Feb 04, 2022
Title Chromosome conformation for wild type, eco1-aa, wpl1Δ and eco1-aa wpl1Δ strains arrested in meiotic prophase I
Organism Saccharomyces cerevisiae
Experiment type Other
Summary High-resolution Hi-C in meiotic prophase arrested cells
 
Overall design Purpose: to determine the impact of Eco1 and Wpl1 on cohesin mediated loop extrusion, with a focus on the pericentromere.
 
Contributor(s) Massari L, Marston A, Robertson D
Citation(s) 35103590
Submission date Sep 29, 2021
Last update date Feb 09, 2022
Contact name Daniel Robertson
E-mail(s) daniel.robertson@ed.ac.uk
Organization name University of Edinburgh
Department Discovery Research Platform for Hidden Cell Biology
Lab Bioinformatics Core
Street address 2.28 Michael Swann Building, Kings Buildings, Mayfield Road
City Edinburgh
State/province Midlothian
ZIP/Postal code EH9 3JR
Country United Kingdom
 
Platforms (1)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
Samples (4)
GSM5603468 HiC1_28719_wt
GSM5603469 HiC1_28720_eco1-aa
GSM5603470 HiC1_29750_wpl1
This SubSeries is part of SuperSeries:
GSE185021 Eco1-dependent cohesin acetylation anchors chromatin loops and cohesion to define functional meiotic chromosome domains
Relations
BioProject PRJNA767384
SRA SRP339321

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185017_RAW.tar 25.7 Mb (http)(custom) TAR (of COOL)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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