|
| Status |
Public on Nov 12, 2021 |
| Title |
RNA-seq of wild-type and ∆metJ Salmonella enterica serovar Typhimurium (14028s) |
| Organism |
Salmonella enterica subsp. enterica serovar Typhimurium |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
An RNA-seq analysis of wild-type Salmonella enterica serovar Typhimurium and ∆metJ isogenic mutant grown under SPI-1-inducing and SPI-2-inducing conditions.
|
| |
|
| Overall design |
RNA-seq on 3 independent replicates of wild-type or ∆metJ S. Typhimurium
|
| |
|
| Contributor(s) |
Bourgeois JS, Ko DC |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Sep 30, 2021 |
| Last update date |
Nov 12, 2021 |
| Contact name |
Jeffrey Bourgeois |
| E-mail(s) |
Jeffrey.Bourgeois@tufts.edu
|
| Organization name |
Tufts University
|
| Street address |
136 Harrison Ave
|
| City |
Boston |
| ZIP/Postal code |
02111 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL23683 |
Illumina MiSeq (Salmonella enterica subsp. enterica serovar Typhimurium) |
|
| Samples (12)
|
| GSM5605697 |
S. Typhimurium WT_SPI-1 Inducing Conditions_1 |
| GSM5605698 |
S. Typhimurium ∆metJ_SPI-1 Inducing Conditions_1 |
| GSM5605699 |
S. Typhimurium WT_SPI-2 Inducing Conditions_1 |
| GSM5605700 |
S. Typhimurium ∆metJ_SPI-2 Inducing Conditions_1 |
| GSM5605701 |
S. Typhimurium WT_SPI-1 Inducing Conditions_2 |
| GSM5605702 |
S. Typhimurium ∆metJ_SPI-1 Inducing Conditions_2 |
| GSM5605703 |
S. Typhimurium WT_SPI-2 Inducing Conditions_2 |
| GSM5605704 |
S. Typhimurium ∆metJ_SPI-2 Inducing Conditions_2 |
| GSM5605705 |
S. Typhimurium WT_SPI-1 Inducing Conditions_3 |
| GSM5605706 |
S. Typhimurium ∆metJ_SPI-1 Inducing Conditions_3 |
| GSM5605707 |
S. Typhimurium WT_SPI-2 Inducing Conditions_3 |
| GSM5605708 |
S. Typhimurium ∆metJ_SPI-2 Inducing Conditions_3 |
|
| This SubSeries is part of SuperSeries: |
| GSE185077 |
Whole-genome integration of DNA methylomics and transcriptomics in Salmonella enterica sero. Typhimurium (14028s) |
|
| Relations |
| BioProject |
PRJNA767604 |
| SRA |
SRP339481 |
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