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Series GSE185270 Query DataSets for GSE185270
Status Public on Oct 01, 2023
Title RNA sequencing of gastric epithelial cells treated with bacteria
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We treated AGS cell line with Helicobacter pylori, Fusobacterium nucleatum, and Neisseria subflava, and extracted RNA after 4 hours. RNAs were applied to RNA sequencing analysis to investigate bacteria-specific effects on gastric epithelial cells.
 
Overall design Examination of transcriptomic analysis on bacteria-treated AGS cells.
 
Contributor(s) Hayakawa Y, Niikura R, Nagata N, Fujishiro M
Citation https://www.sciencedirect.com/science/article/pii/S2772572323000456
Submission date Oct 04, 2021
Last update date Jan 05, 2024
Contact name Yoku Hayakawa
E-mail(s) hayakawayoku@gmail.com, yhayakawa-tky@umin.ac.jp
Phone 81-3-38155411
Organization name University of Tokyo
Street address 7-3-1, Hongo, Bunkyo-ku, Clinical Research Center 4F, Room 425
City Tokyo
State/province TOKYO
ZIP/Postal code 1138655
Country Japan
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (8)
GSM5609856 Fn-2
GSM5609857 Fn-3
GSM5609858 Hp-2
Relations
BioProject PRJNA768426
SRA SRP339951

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE185270_Expression_BrowserAGS.xlsx 12.9 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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