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Series GSE186291 Query DataSets for GSE186291
Status Public on Mar 30, 2022
Title Single-cell ATAC of WT thymic IEL precursors (IELp)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To examine the chromatin accessibility of IELp, single cell epigenomic analysis of IELp from control mice (Cd4 Cre–Lrffl/fl) were determined by scATACseq
 
Overall design IELp from control (Cd4 Cre–Lrffl/fl) mice were sorted and single cell transcriptomic analysis was determined by scATAC
 
Contributor(s) Bosselut R, Nie J
Citation(s) 35354951
Submission date Oct 20, 2021
Last update date Jun 29, 2022
Contact name Jia Nie
E-mail(s) jia.nie@nih.gov
Organization name National Cancer Institute
Department Center for Cancer Research
Lab Laboratory of Immune cell Biology
Street address Building 37, Room 3016
City Bethesda
State/province Maryland
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (2)
GSM5643204 IELp Ctrl_rep_1 [ATAC-seq]
GSM5643206 IELp Ctrl_rep_2 [ATAC-seq]
Relations
BioProject PRJNA773138
SRA SRP342454

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE186291_RAW.tar 3.2 Gb (http)(custom) TAR (of CSV, H5, TBI, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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