GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE186291 Query DataSets for GSE186291
Status Public on Mar 30, 2022
Title Single-cell ATAC of WT thymic IEL precursors (IELp)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To examine the chromatin accessibility of IELp, single cell epigenomic analysis of IELp from control mice (Cd4 Cre–Lrffl/fl) were determined by scATACseq
Overall design IELp from control (Cd4 Cre–Lrffl/fl) mice were sorted and single cell transcriptomic analysis was determined by scATAC
Contributor(s) Bosselut R, Nie J
Citation(s) 35354951
Submission date Oct 20, 2021
Last update date Jun 29, 2022
Contact name Jia Nie
Organization name National Cancer Institute
Department Center for Cancer Research
Lab Laboratory of Immune cell Biology
Street address Building 37, Room 3016
City Bethesda
State/province Maryland
ZIP/Postal code 20892
Country USA
Platforms (1)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (2)
GSM5643204 IELp Ctrl_rep_1 [ATAC-seq]
GSM5643206 IELp Ctrl_rep_2 [ATAC-seq]
BioProject PRJNA773138
SRA SRP342454

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE186291_RAW.tar 3.2 Gb (http)(custom) TAR (of CSV, H5, TBI, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap