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| Status |
Public on Apr 16, 2024 |
| Title |
RNA sequencing in iAM-1 differentiated cells and RnSbk2 knockdown |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
RNA sequencing in iAM-1 differentiated cells and RnSbk2 knockdown
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| Overall design |
Examination of transcriptome of conditionally immortalized neonatal rat atrial myocytes treated with lentiviral shRNA RnSbk2 knockdown constructs
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| Contributor(s) |
van Gorp PR, de Vries AA |
| Citation(s) |
35587025 |
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| Submission date |
Oct 26, 2021 |
| Last update date |
Apr 16, 2024 |
| Contact name |
Pim van Gorp |
| E-mail(s) |
p.r.r.van_gorp@lumc.nl
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| Organization name |
Leiden University Medical Center
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| Department |
Experimental Cardiology
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| Street address |
Albinusdreef 2
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| City |
Leiden |
| State/province |
Zuid-Holland |
| ZIP/Postal code |
2333ZA |
| Country |
Netherlands |
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| Platforms (1) |
| GPL25947 |
Illumina NovaSeq 6000 (Rattus norvegicus) |
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| Samples (12)
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| GSM5657980 |
#6 iAM-1 D9, P10, ppluc shRNA, n=1 |
| GSM5657981 |
#7 iAM-1 D9, P10, ppluc shRNA, n=2 |
| GSM5657982 |
#10 iAM-1 D9, P10, ppluc shRNA, n=3 |
| GSM5657983 |
#11 iAM-1 D9, P10, Sbk2 shRNA #1, n=1 |
| GSM5657984 |
#11 iAM-1 D9, P10, Sbk2 shRNA #1, n=2 |
| GSM5657985 |
#11 iAM-1 D9, P10, Sbk2 shRNA #1, n=3 |
| GSM5657986 |
#11 iAM-1 D9, P10, Sbk2 shRNA #2, n=1 |
| GSM5657987 |
#11 iAM-1 D9, P10, Sbk2 shRNA #2, n=2 |
| GSM5657988 |
#11 iAM-1 D9, P10, Sbk2 shRNA #2, n=3 |
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| Relations |
| BioProject |
PRJNA774810 |
| SRA |
SRP343270 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE186626_iAM-1_RnSbk2_KD_CPM_and_TPM_reads.xlsx |
4.9 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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