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Series GSE187461 Query DataSets for GSE187461
Status Public on Nov 01, 2022
Title Chromatin-associated Microprocessor assembly is regulated by PRP40 – U1 snRNP auxiliary protein
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary In order to assess the possible effects of prp40ab double mutant on co-transcriptional miRNA biogenesis, small RNA sequencing was performed as well as RNA PolII and DCL1 distribution were tested on MIR genes (ChIPseq).
 
Overall design Examination of miRNA biogenesis and RNA PolII, DCL1 distribution in prp40ab mutant
 
Contributor(s) Dolata J, Stepien A, Bielewicz D, Jarmolowski A
Citation(s) 36087009
BioProject PRJNA774919
Submission date Nov 03, 2021
Last update date Jan 03, 2023
Contact name Jakub Jacek Dolata
E-mail(s) j.dolata@amu.edu.pl
Organization name Adam Mickiewicz University
Department Department of Gene Expression
Street address Uniwersytetu Poznanskiego 6
City Poznan
ZIP/Postal code 61-614
Country Poland
 
Platforms (2)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
GPL21785 Illumina HiSeq 4000 (Arabidopsis thaliana)
Samples (17)
GSM5668542 PolII_ChIP_WT_PolII_total_rep1
GSM5668543 PolII_ChIP_prp40ab_PolII_total_rep1
GSM5668544 PolII_ChIP_WT_noAb_rep1

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE187461_RAW.tar 3.8 Gb (http)(custom) TAR (of BED, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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