GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE189670 Query DataSets for GSE189670
Status Public on Jan 23, 2023
Title A single cell host/pathogen transcriptome atlas of the HPV16 infected epidermis identifies a novel differentiation-dissonant keratinocyte population implicated in cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We report the first single cell transcriptome atlas of HPV16-infected epithelium, describe relevant cell populations and molecular networks as a foundation for antiviral target discovery, and identify a novel differentiation-dissonant keratinocyte population that is implicated in HPV-associated cancer types
Overall design Human HPV16 infected keratinocytes were analyzed using 10X single-cell rna-seq
Contributor(s) Adam M, Wells S
Citation(s) 37031202
Submission date Nov 27, 2021
Last update date Apr 24, 2023
Contact name Steve Potter
Organization name Cincinnati Children's Hospital Research Foundation
Department Developmental Biology
Street address 240 Albert Sabin Way
City Cincinnati
State/province Ohio
ZIP/Postal code 45229
Country USA
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (2)
GSM5705759 Normal keratinocytes
GSM5705760 HPV16 infected keratinocytes
BioProject PRJNA784111
SRA SRP348179

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE189670_RAW.tar 356.2 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap