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Status |
Public on Jan 11, 2022 |
Title |
SNP array data for Wilms Tumor harboring de novo germline mutation in CTCF |
Organism |
Homo sapiens |
Experiment type |
Genome variation profiling by genome tiling array Genome variation profiling by SNP array SNP genotyping by SNP array
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Summary |
SNP array was combined with next generation sequencing (NGS) to identify a unique de novo germline mutation in CTCF that became homozygous in the tumor. SNP array shows an LOH through chr16q where CTCF is located.
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Overall design |
CytoScan HD arrays (Affymetrix) were performed according to the manufacturer's directions on DNA extracted from Wilms tumor sample.
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Contributor(s) |
Font de Mora J, Gargallo P |
Citation(s) |
35459888 |
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Submission date |
Jan 04, 2022 |
Last update date |
Apr 27, 2022 |
Contact name |
Jaime Font de Mora Sain |
E-mail(s) |
jaime.fontdemora@gmail.com
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Phone |
+34961246646
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Organization name |
Instituto de Investigación Sanitaria La Fe
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Department |
Oncology
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Lab |
Laboratory of Cellular and Molecular Biology
|
Street address |
Avenida Fernando Abril Martorell, 106
|
City |
Valencia |
State/province |
Valencia |
ZIP/Postal code |
46026 |
Country |
Spain |
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Platforms (1) |
GPL16131 |
[CytoScanHD_Array] Affymetrix CytoScan HD Array |
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Samples (1) |
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This SubSeries is part of SuperSeries: |
GSE193235 |
Germline Variant in *Ctcf* Links Mental Retardation to Wilms Tumor Predisposition |
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Relations |
BioProject |
PRJNA794136 |