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Series GSE194100 Query DataSets for GSE194100
Status Public on Jan 23, 2022
Title The m6A reader YTHDC2 is essential for escape from KSHV SOX-induced RNA decay
Organism Homo sapiens
Experiment type Other
Summary Here we used m6A-eCLIP to enrich for m6A in RNA samples from latent and lytic KHSV infected mammalian cells. Through this highthroughput method we were able to not only indentify differences of m6A clusters between KSHV states, but through the use of the PureCLIP porgram identify m6A sites with single nucelotide resolution. From there were able to identify m6A sites on an SRE containing transcript, IL-6.
 
Overall design m6A-eCLIP RNA sequencing data
 
Contributor(s) MacVeigh-Fierro D, Cadorette A, Sharma V, Cicerchia A, Muller M
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Submission date Jan 20, 2022
Last update date Jan 25, 2022
Contact name Daniel MacVeigh-Fierro
E-mail(s) dmacveighfie@umass.edu
Organization name UMass Amherst
Department Microbiology
Lab Muller Lab
Street address 639 N Pleasant St, Morrill Iv North
City Amherst
State/province MA
ZIP/Postal code 01003
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (4)
GSM5828119 Input iSLK-48R
GSM5828120 Input iSLK-UR
GSM5828121 iSLK-48R
Relations
BioProject PRJNA799056

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE194100_RAW.tar 231.8 Mb (http)(custom) TAR (of BED, BW, XLSX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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