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GEO accession:
Series GSE195886
Query DataSets for GSE195886
Status
Public on Sep 07, 2022
Title
Human centromere repositioning activates transcription and opens chromatin fibre structure
Organisms
Homo sapiens
;
Cricetulus griseus
Experiment type
Genome binding/occupancy profiling by genome tiling array
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36153345
Submission date
Feb 01, 2022
Last update date
Sep 28, 2022
Contact name
Catherine Naughton
E-mail(s)
Catherine.Naughton@ed.ac.uk
Organization name
University of Edinburgh
Department
MRC Human Genetics Unit
Lab
Nick Gilbert Lab
Street address
Crewe Road
City
Edinburgh
ZIP/Postal code
EH4 2XU
Country
United Kingdom
Platforms (4)
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GPL31868
Agilent-077398 CN1_neo3 G4821A
GPL31869
Agilent-053809 CN1_centromere
GPL31910
Illumina NovaSeq 6000 (Cricetulus griseus; Homo sapiens)
GPL31911
Illumina HiSeq 2000 (Cricetulus griseus; Homo sapiens)
Samples (68)
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GSM5855863
GM10253A_open_chromatin_rep1
GSM5855864
GM10253A_open_chromatin_rep2
GSM5855865
GM10253A_open_chromatin_rep3
GSM5855866
HybNeo3_open_chromatin_rep1
GSM5855867
HybNeo3_open_chromatin_rep2
GSM5855868
HybNeo3_open_chromatin_rep3
GSM5855869
GM10253A_amanitin_open_chromatin_rep1
GSM5855870
GM10253A_amanitin_open_chromatin_rep2
GSM5855871
HybNeo3_amanitin_open_chromatin_rep1
GSM5855872
HybNeo3_amanitin_open_chromatin_rep2
GSM5855873
GM10253A_bTMP_chip_rep1
GSM5855874
GM10253A_bTMP_chip_rep2
GSM5855875
GM10253A_bTMP_chip_amanitin_rep1
GSM5855876
HybNeo3_bTMP_chip_rep1
GSM5855877
HybNeo3_bTMP_chip_rep2
GSM5855878
HybNeo3_bTMP_chip_amanitin_rep1
GSM5855879
HybNeo3_bTMP_chip_amanitin_rep2
GSM5855880
GM10253A_H3K7ac_ChIP_chip_rep1
GSM5855881
HybNeo3_H3K27ac_ChIP_chip_rep1
GSM5855882
GM10253A_H3K4me2_ChIP_chip_rep1
GSM5855883
HybNeo3_H3K4me2_ChIP_chip_rep1
GSM5855884
GM10253A_H3K4me2_ChIP_chip_rep2
GSM5855885
HybNeo3_H3K4me2_ChIP_chip_rep2
GSM5855886
GM10253A_H3K9me2_ChIP_chip_rep1
GSM5855887
HybNeo3_H3K9me2_ChIP_chip_rep1
GSM5855888
GM10253A_H3K9me3_ChIP_chip_rep1
GSM5855889
HybNeo3_H3K9me3_ChIP_chip_rep1
GSM5855890
GM10253A_H4K20me1_ChIP_chip_rep1
GSM5855891
HybNeo3_H4K20me1_ChIP_chip_rep1
GSM5855892
GM10253A_H4K20me1_ChIP_chip_rep2
GSM5855893
HybNeo3_H4K20me1_ChIP_chip_rep2
GSM5855894
GM10253A_H3K27me3_ChIP_chip_rep1
GSM5855895
HybNeo3_H3K27me3_ChIP_chip_rep1
GSM5855896
GM10253A_H3K27me3_ChIP_chip_rep2
GSM5855897
HybNeo3_H3K27me3_ChIP_chip_rep2
GSM5855898
GM10253A_H3K36me3_ChIP_chip_rep1
GSM5855899
HybNeo3_H3K36me3_ChIP_chip_rep1
GSM5855900
GM10253A_RNApolymerase_D2_ChIP_chip_rep1
GSM5855901
GM10253A_RNApolymerase_D2_ChIP_chip_rep2
GSM5855902
GM10253A_RNApolymerase_D2_ChIP_chip_rep3
GSM5855903
GM10253A_RNApolymerase_D2_ChIP_chip_rep4
GSM5855904
HybNeo3_RNApolymerase_D2_ChIP_chip_rep1
GSM5855905
HybNeo3_RNApolymerase_D2_ChIP_chip_rep2
GSM5855906
HybNeo3_RNApolymerase_D2_ChIP_chip_rep3
GSM5855907
GM10253A_RNApolymerase_HK1_ChIP_chip_rep1
GSM5855908
HybNeo3_RNApolymerase_HK1_ChIP_chip_rep1
GSM5855909
GM10253A_CTCF_ChIP_chip_rep1
GSM5855910
HybNeo3_CTCF_ChIP_chip_rep1
GSM5855911
GM10253A_CENPC_ChIP_chip_rep1
GSM5855912
HybNeo3_CENPC_ChIP_chip_rep1
GSM5855913
Parental_CENPC_ChIP_chip_rep1
GSM5855914
Parental_CENPA_ChIP_chip_rep1
GSM5855915
GM10253A_IgG_ChIP_chip_rep1
GSM5855916
HybNeo3_IgG_ChIP_chip_rep1
GSM5861360
TTseq_GM10253A_1
GSM5861361
TTseq_GM10253A_2
GSM5861362
TTseq_GM10253A_ExoKD_1
GSM5861363
TTseq_GM10253A_ExoKD_2
GSM5861364
TTseq_HybNeo3_1
GSM5861365
TTseq_HybNeo3_2
GSM5861366
TTseq_HybNeo3_ExoKD_1
GSM5861367
TTseq_HybNeo3_ExoKD_2
GSM5861418
RNAseq_GM10253A_1
GSM5861419
RNAseq_GM10253A_2
GSM5861420
RNAseq_HybNeo3_1
GSM5861421
RNAseq_HybNeo3_2
GSM6552576
Parental_Neo6_CENPC_ChIP_chip_rep1
GSM6552577
Parental_Neo6_CENPA_ChIP_chip_rep1
This SuperSeries is composed of the following SubSeries:
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GSE195883
Human centromere repositioning activates transcription and opens chromatin fibre structure [Agilent 'open' chromatin-chip]
GSE195884
Human centromere repositioning activates transcription and opens chromatin fibre structure [Agilent bTMP-chip]
GSE195885
Human centromere repositioning activates transcription and opens chromatin fibre structure [Agilent ChIP-chip]
GSE196155
Human centromere repositioning activates transcription and opens chromatin fibre structure [TTseq]
GSE196160
Human centromere repositioning activates transcription and opens chromatin fibre structure [RNAseq]
Relations
BioProject
PRJNA802545
Download family
Format
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Series Matrix File(s)
TXT
Supplementary file
Size
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File type/resource
GSE195886_RAW.tar
1.0 Gb
(http)
(custom)
TAR (of TXT)
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