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Series GSE196132 Query DataSets for GSE196132
Status Public on Feb 04, 2022
Title Chromosome conformation for wild type, eco1-aa, cdc6-mn and eco1-aa cdc6-mn strains arrested in meiotic prophase I
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary High-resolution Hi-C in meiotic prophase I arrested cells
 
Overall design Purpose: to determine the relative impact of Eco1 and cohesive cohesin on loop extrusion in meiotic prophase I, with a focus on the pericentromere.
 
Contributor(s) Massari LF, Marston AL, Robertson D
Citation(s) 35103590
Submission date Feb 04, 2022
Last update date Feb 09, 2022
Contact name Daniel Robertson
E-mail(s) daniel.robertson@ed.ac.uk
Organization name University of Edinburgh
Department Wellcome Centre for Cell Biology
Lab Bioinformatics Core Facility
Street address 2.28 Michael Swann Building, Kings Buildings, Mayfield Road
City Edinburgh
State/province Midlothian
ZIP/Postal code EH9 3JR
Country United Kingdom
 
Platforms (1)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
Samples (4)
GSM5860797 HiC1_28719_wildtype
GSM5860798 eco1-aa
GSM5860799 cdc6-mn
This SubSeries is part of SuperSeries:
GSE185021 Eco1-dependent cohesin acetylation anchors chromatin loops and cohesion to define functional meiotic chromosome domains
Relations
BioProject PRJNA803447

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE196132_RAW.tar 35.6 Mb (http)(custom) TAR (of COOL)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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