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Series GSE196450 Query DataSets for GSE196450
Status Public on Jul 28, 2023
Title Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
Web link https://www.nature.com/articles/s41467-023-41316-4
 
Citation(s) 37726281
Submission date Feb 09, 2022
Last update date Oct 03, 2023
Contact name Ryuichiro Nakato
E-mail(s) rnakato@iqb.u-tokyo.ac.jp
Phone +81-3-5841-1471
Organization name The University of Tokyo
Department Institute for Quantitative Biosciences
Lab Laboratory of Computational Genomics
Street address 1-1-1 Yayoi
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-0032
Country Japan
 
Platforms (3)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL20795 HiSeq X Ten (Homo sapiens)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (126)
GSM5858314 Hi-C siCTCF replicate1
GSM5858315 Hi-C siCTCF replicate2
GSM5858316 Hi-C siCTCF 72h
This SuperSeries is composed of the following SubSeries:
GSE196034 Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors [Hi-C]
GSE196449 Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors [RNA-seq]
GSE196727 Context-dependent perturbations in chromatin folding and the transcriptome by cohesin and related factors [ChIP-seq]
Relations
BioProject PRJNA804917

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE196450_RAW.tar 58.2 Gb (http)(custom) TAR (of BED, BW, HIC, TXT)
SRA Run SelectorHelp

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