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Series GSE197357 Query DataSets for GSE197357
Status Public on Feb 08, 2023
Title Identification of NLP2 in vivo targets using ChIP-Seq in Arabidopsis thaliana
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Chromatin immunoprecipitation was performed in nlp2-2 Arabidopsis thaliana Col-0 14-d-old seedlings complemented by a pNLP2::NLP2-GFP construct upon 30 minutes NO3- resupply after a 3-day NO3- starvation.
 
Overall design Genome-wide profiling of NLP2 binding regions by ChIP-Seq, 2 biological replicates
 
Contributor(s) Roudier F, Krapp A
Citation(s) 36752317
Submission date Feb 24, 2022
Last update date May 10, 2023
Contact name François ROUDIER
E-mail(s) francois.roudier@ens-lyon.fr
Organization name Ecole Normale Supérieure de Lyon
Department Biologie
Lab RDP
Street address 46 Allée d'Italie
City Lyon
ZIP/Postal code 69364
Country France
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (6)
GSM5915102 NLP2-T0_rep1
GSM5915103 NLP2-T0_rep2
GSM5915104 NLP2-T30_rep1
Relations
BioProject PRJNA810026

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197357_INPUT_NLP2-T0_peaks.qval2.bed.gz 1.8 Kb (ftp)(http) BED
GSE197357_INPUT_NLP2-T30_peaks.qval2.bed.gz 588 b (ftp)(http) BED
GSE197357_NLP2-T0_POOLED-IDR_noCM_noINPUT.narrowPeak.gz 13.5 Kb (ftp)(http) NARROWPEAK
GSE197357_NLP2-T30_POOLED-IDR_noCM_noINPUT.narrowPeak.gz 15.5 Kb (ftp)(http) NARROWPEAK
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Raw data are available in SRA
Processed data are available on Series record

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