GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE197357 Query DataSets for GSE197357
Status Public on Feb 08, 2023
Title Identification of NLP2 in vivo targets using ChIP-Seq in Arabidopsis thaliana
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Chromatin immunoprecipitation was performed in nlp2-2 Arabidopsis thaliana Col-0 14-d-old seedlings complemented by a pNLP2::NLP2-GFP construct upon 30 minutes NO3- resupply after a 3-day NO3- starvation.
Overall design Genome-wide profiling of NLP2 binding regions by ChIP-Seq, 2 biological replicates
Contributor(s) Roudier F, Krapp A
Citation(s) 36752317
Submission date Feb 24, 2022
Last update date May 10, 2023
Contact name François ROUDIER
Organization name Ecole Normale Supérieure de Lyon
Department Biologie
Street address 46 Allée d'Italie
City Lyon
ZIP/Postal code 69364
Country France
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (6)
GSM5915102 NLP2-T0_rep1
GSM5915103 NLP2-T0_rep2
GSM5915104 NLP2-T30_rep1
BioProject PRJNA810026

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197357_INPUT_NLP2-T0_peaks.qval2.bed.gz 1.8 Kb (ftp)(http) BED
GSE197357_INPUT_NLP2-T30_peaks.qval2.bed.gz 588 b (ftp)(http) BED
GSE197357_NLP2-T0_POOLED-IDR_noCM_noINPUT.narrowPeak.gz 13.5 Kb (ftp)(http) NARROWPEAK
GSE197357_NLP2-T30_POOLED-IDR_noCM_noINPUT.narrowPeak.gz 15.5 Kb (ftp)(http) NARROWPEAK
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap