|
| Status |
Public on Mar 16, 2023 |
| Title |
Mutating DDM1 in Physcomitrella patens disrupts DNA methylation with a minute effect on transposon regulation and development [Bisulfite-seq] |
| Organism |
Physcomitrium patens |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
We mutated PpDDM1 and the early land plant. Using BS-seq and RNA-seq, we here show that though DNA methylation is disrupted in all contexts development isn't and TE and gene differential expression are minute
|
| |
|
| Overall design |
Whole-genome bisulfite sequencing of P. patens Wild-type and ddm1
|
| |
|
| Contributor(s) |
Griess O, Katz A, Domb K, Harris KD, Heskiau KG, Ohad N, Zemach A |
| Citation(s) |
36888585 |
| Submission date |
Feb 28, 2022 |
| Last update date |
Jun 20, 2023 |
| Contact name |
Ofir Griess |
| E-mail(s) |
ofir.griess@gmail.com
|
| Organization name |
Tel Aviv University
|
| Department |
Plant Sciences and Food Security
|
| Lab |
Assaf Zemach and Nir Ohad
|
| Street address |
Haim Levanon 31
|
| City |
Tel Aviv |
| ZIP/Postal code |
39040 |
| Country |
Israel |
| |
|
| Platforms (1) |
| GPL29161 |
Illumina HiSeq 2000 (Physcomitrium patens) |
|
| Samples (2) |
|
| This SubSeries is part of SuperSeries: |
| GSE198693 |
Mutating DDM1 in Physcomitrella patens disrupts DNA methylation with a minute effect on transposon regulation and development |
|
| Relations |
| BioProject |
PRJNA811135 |
