|
| Status |
Public on Mar 17, 2023 |
| Title |
hMeDIP-Seq of Tet2 overexpressing hippocampal neurons |
| Organism |
Mus musculus |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Tet2 regulates gene expression by oxidizing 5-methylcytosine to 5-hydroxymethylcytosine. Profiling the genomic locations of 5-hydroxymethylcytosine after Tet2 manipulation can inform us of the targets of Tet2 regulation. We profiled hydroxymethylcytosine in Tet2 ovexpressing neurons to determine the targets of Tet2 in neurons.
|
| |
|
| Overall design |
hMeDIP-Seq of Tet2 overexpressing or GFP hippocampal neurons
|
| |
|
| Contributor(s) |
Shea J, Pratt K, Villeda S |
| Citation(s) |
36719799 |
| Submission date |
Mar 17, 2022 |
| Last update date |
Jun 16, 2023 |
| Contact name |
Jeremy Michael Shea |
| Organization name |
University of California, San Francisco
|
| Department |
Anatomy
|
| Lab |
Villeda
|
| Street address |
513 Parnassus Avenue
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
|
| Samples (11)
|
|
| Relations |
| BioProject |
PRJNA817338 |
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