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Series GSE19956 Query DataSets for GSE19956
Status Public on Jan 21, 2010
Title CNV S2-DRSC Cells
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome variation profiling by high throughput sequencing
Summary modENCODE_submission_2551
This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see
Project Goal: Analysis of copy number variation across modENCODE Drosophila cell line by high throughput sequencing. We observe numerous copy number variations for the different cell lines, with each cell line having a distinct ploidy signature.

For data usage terms and conditions, please refer to and

Keywords: deep sequencing analysis
Overall design EXPERIMENT TYPE: deep sequencing analysis. BIOLOGICAL SOURCE: Cell Line: S2-DRSC; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Sex: Male; EXPERIMENTAL FACTORS: Cell Line S2-DRSC
Web link
Contributor(s) MacAlpine D, Powell S, Eaton M
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63463
Submission date Jan 20, 2010
Last update date May 15, 2019
Contact name DCC modENCODE
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (2)
GSM498668 cnv_S2-DRSC_1 extraction1_seq1
GSM498669 cnv_S2-DRSC_2 extraction2_seq1
SRA SRP001737

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE19956_s2_cnv.wig.gz 155.1 Kb (ftp)(http) WIG
SRA Run SelectorHelp
Processed data are available on Series record
Raw data are available in SRA

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