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Series GSE199701 Query DataSets for GSE199701
Status Public on Apr 21, 2023
Title Integrative analysis of genomic structural variants in human leukemia
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 36947815
Submission date Mar 29, 2022
Last update date Apr 23, 2023
Contact name Jian Xu
E-mail(s) Jian.Xu@UTSouthwestern.edu
Phone 214-648-6125
Organization name UT Southwestern Medical Center
Department Children's Research Institute
Street address 6000 Harry Hines Blvd. NL12.138B
City Dallas
State/province TX
ZIP/Postal code 75235
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (119)
GSM5981766 ATAC-seq_Jurkat-WT_rep1
GSM5981767 ATAC-seq_Jurkat-WT_rep2
GSM5981768 ATAC-seq_Jurkat-SV_rep1
This SuperSeries is composed of the following SubSeries:
GSE199691 ATAC-seq analysis of wild-type Jurkat, SV engineered Jurkat, DND-41 and LOUCY leukemia cell lines
GSE199693 ChIP-seq analysis of H3K27ac, TLX3 and MYB in human primary leukemia cells and cell lines
GSE199694 4C-seq analysis of chromatin interactions at the TLX3 and BCL11B loci in human primary leukemia samples and cell lines
Relations
BioProject PRJNA821195

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE199701_RAW.tar 4.0 Gb (http)(custom) TAR (of BEDGRAPH, BW, COOL)
SRA Run SelectorHelp

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