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| Status |
Public on Apr 05, 2022 |
| Title |
Spatial organization of H3K9me2/3-marked heterochromatin is redundantly maintained by either the H3K9 or H3K27 methylation pathway |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
37178005 |
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| Submission date |
Apr 02, 2022 |
| Last update date |
Sep 11, 2023 |
| Contact name |
Kei Fukuda |
| E-mail(s) |
kefukuda8@gmail.com
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| Organization name |
RIKEN
|
| Lab |
Cellular memory
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| Street address |
2-1 Hrosawa, Wakoshi
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| City |
Saitama |
| State/province |
Japan |
| ZIP/Postal code |
351-0198 |
| Country |
Japan |
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| Platforms (2) |
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| Samples (51)
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| GSM6001981 |
TKO,DMSO,BS,rep2 |
| GSM6001982 |
5KO,DMSO,BS,rep1 |
| GSM6001983 |
5KO,DMSO,BS,rep2 |
| GSM6001984 |
5KO,DS,BS,rep1 |
| GSM6001985 |
5KO,DS,BS,rep2 |
| GSM6001986 |
WT, H3K9me3, 2F3, rep1 |
| GSM6001987 |
WT, H3K9me2, 6D11, rep1 |
| GSM6001988 |
WT, H3K9me2, 6D11, rep2 |
| GSM6001989 |
WT, H3K27me3, rep1 |
| GSM6001990 |
WT, H3K27me3, rep2 |
| GSM6001991 |
5KO, H3K27me3, rep1 |
| GSM6001992 |
5KO, H3K27me3, rep2 |
| GSM6001993 |
WT, input, rep1 |
| GSM6001994 |
WT, input, rep2 |
| GSM6001995 |
5KO, input, rep1 |
| GSM6001996 |
5KO, input, rep2 |
| GSM6004835 |
WT,DMSO,LaminAC,rep1 |
| GSM6004836 |
WT,DMSO,LaminAC,rep2 |
| GSM6004837 |
WT,DS,LaminAC,rep1 |
| GSM6004838 |
WT,DS,LaminAC,rep2 |
| GSM6004839 |
WT,DMSO,Inp,rep1 |
| GSM6004840 |
WT,DMSO,Inp,rep2 |
| GSM6004841 |
WT,DS,Inp,rep1 |
| GSM6004842 |
WT,DS,Inp,rep2 |
| GSM6004843 |
5KO,DMSO,LaminAC,rep1 |
| GSM6004844 |
5KO,DMSO,LaminAC,rep2 |
| GSM6004845 |
5KO,DS,LaminAC,rep1 |
| GSM6004846 |
5KO,DS,LaminAC,rep2 |
| GSM6004847 |
5KO,DMSO,Inp,rep1 |
| GSM6004848 |
5KO,DMSO,Inp,rep2 |
| GSM6004849 |
5KO,DS,Inp,rep1 |
| GSM6004850 |
5KO,DS,Inp,rep2 |
| GSM6612265 |
WT,DMSO,HiC,rep1 |
| GSM6612266 |
WT,DMSO,HiC,rep2 |
| GSM6612267 |
WT,DS,HiC,rep1 |
| GSM6612268 |
WT,DS,HiC,rep2 |
| GSM6612269 |
5KO,DMSO,HiC,rep1 |
| GSM6612270 |
5KO,DMSO,HiC,rep2 |
| GSM6612271 |
5KO,DS,HiC,rep1 |
| GSM6612272 |
5KO,DS,HiC,rep2 |
| GSM6612273 |
WT,DMSO,RNA,rep1 |
| GSM6612274 |
WT,DMSO,RNA,rep2 |
| GSM6612275 |
WT,DS,RNA,rep1 |
| GSM6612276 |
WT,DS,RNA,rep2 |
| GSM6612277 |
5KO,DMSO,RNA,rep1 |
| GSM6612278 |
5KO,DMSO,RNA,rep2 |
| GSM6612279 |
5KO,DS,RNA,rep1 |
| GSM6612280 |
5KO,DS,RNA,rep2 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE200010 |
Spatial organization of H3K9me2/3-marked heterochromatin is redundantly maintained by either the H3K9 or H3K27 methylation pathway [MethylC-seq] |
| GSE200011 |
Spatial organization of H3K9me2/3-marked heterochromatin is redundantly maintained by either the H3K9 or H3K27 methylation pathway [ChIP-Seq] |
| GSE200012 |
Spatial organization of H3K9me2/3-marked heterochromatin is redundantly maintained by either the H3K9 or H3K27 methylation pathway [Hi-C] |
| GSE200014 |
Spatial organization of H3K9me2/3-marked heterochromatin is redundantly maintained by either the H3K9 or H3K27 methylation pathway [HistoneLamin] |
| GSE200015 |
Spatial organization of H3K9me2/3-marked heterochromatin is redundantly maintained by either the H3K9 or H3K27 methylation pathway [RNA-Seq] |
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| Relations |
| BioProject |
PRJNA822626 |
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