NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE200506 Query DataSets for GSE200506
Status Public on Jul 01, 2023
Title Strength of CD28 costimulation directs self-renewal or differentiation of TCF-1+ PD-1+ CD8 T cells through metabolic regulation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary During persistent antigen stimulation, such as in chronic infections and cancer, T cells differentiate into a hypofunctional exhausted state to survive. Exhausted PD-1+ CD8 T cell responses are sustained by TCF-1+ precursors (Tpex) that self-renew or differentiate into exhausted T cells (Tex) that retain some effector function. Tpex have high expression of the costimulatory molecule CD28 and are the cells that respond to PD-1 targeted immunotherapy. Here, we demonstrate that abrogation of CD28 signaling impairs maintenance of anti-viral T cell responses during chronic infection. Low-level CD28 signaling was required to preserve mitochondrial fitness and self-renewal of Tpex, whereas stronger CD28 signaling enhanced glycolysis and promoted Tpex differentiation. Our findings show that CD28 signaling is essential for long-term maintenance of antigen-specific T cells during chronic stimulation, and suggest that the activation status of antigen presenting cells determines Tpex differentiation into more functional effector-like Tex cells.
 
Overall design Gene expression analysis of bulk sorted Tpex (CD73+) or Tex (Tim3+) P14 CD28flox CREert2+ (CD28neg) or creERT2neg (CD28+) from mice chronically infected with LCMV cl13 and 2 weeks post tamoxifen treatment to understand the molecular impact of CD28 loss in maintenance and differentiation of virus-specific T cells.
 
Contributor(s) Humblin E, Filipescu D, Kamphorst A
Citation(s) 37624910
Submission date Apr 08, 2022
Last update date Oct 02, 2023
Contact name Dan Filipescu
E-mail(s) dan.filipescu@mssm.edu
Phone 2128249265
Organization name Icahn School of Medicine at Mount Sinai
Department Oncological Sciences
Lab Emily Bernstein
Street address 1470 Madison Ave
City New York
State/province New York
ZIP/Postal code 10029
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (16)
GSM6035287 Tpex/CD73+ CD28+ #1
GSM6035288 Tpex/CD73+ CD28+ #2
GSM6035289 Tpex/CD73+ CD28+ #3
Relations
BioProject PRJNA824842

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE200506_RAW.tar 27.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap