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Series GSE201235 Query DataSets for GSE201235
Status Public on Feb 15, 2023
Title Enzymatic reactions of AGO4 in RNA-directed DNA methylation: siRNA duplex loading, passenger strand elimination, target RNA slicing, and sliced target retention
Organism Arabidopsis thaliana
Experiment type Non-coding RNA profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 36746605
Submission date Apr 21, 2022
Last update date Feb 18, 2023
Contact name Craig S. Pikaard
E-mail(s) cpikaard@indiana.edu
Organization name Howard Hughes Medical Institute, Indiana University
Department Department of Biology and Department of Molecular and Cellular Biochemistry
Street address 915 E. Third Street
City Bloomington
State/province Indiana
ZIP/Postal code 47405
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (14)
GSM6053228 sRNA-seq, mock immunoprecipitation, biol rep 1
GSM6053229 sRNA-seq, wild-type AGO4 immunoprecipitation, biol rep 1
GSM6053230 sRNA-seq, slicing-defective AGO4 immunoprecipitation, biol rep 1
This SuperSeries is composed of the following SubSeries:
GSE201233 AGO4 slicer activity reveals the passenger strand function of plant 23 nt siRNAs and the post-slicing retention of target RNAs mediating RNA-directed DNA methylation [smallRNA-seq]
GSE201234 AGO4 slicer activity reveals the passenger strand function of plant 23 nt siRNAs and the post-slicing retention of target RNAs mediating RNA-directed DNA methylation [WGBS]
Relations
BioProject PRJNA830473

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE201235_RAW.tar 2.1 Gb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp

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