 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 21, 2023 |
| Title |
Effect of trans-vaccenic acid(TVA) diet on 16S ribosomal RNA (rRNA) expression of mouse gut microbiome |
| Organism |
feces metagenome |
| Experiment type |
Other
|
| Summary |
To investigate the TVA diet's effect on mouse gut microbiome, we fed C57/BL6 mice with TVA diet or CON diet for 18 days
We then collected feces of the mice and performed 16S ribosomal RNA (rRNA) sequencing.
|
| |
|
| Overall design |
Comparative gene expression profiling analysis of 16S rRNAseq data for CON group and TVA group.
|
| |
|
| Contributor(s) |
Fan H, Dong L, Su R, Gao X, Chen J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
May 05, 2022 |
| Last update date |
Sep 22, 2023 |
| Contact name |
fan hao |
| E-mail(s) |
haofan@uchicago.edu
|
| Organization name |
University of Chicago
|
| Street address |
5801 S Ellis Ave
|
| City |
Chicago |
| State/province |
IL |
| ZIP/Postal code |
60637 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24937 |
Illumina HiSeq 2500 (feces metagenome) |
|
| Samples (14)
|
| GSM6107489 |
Mouse gut feces, TVA diet (zr4773_1V3V4) |
| GSM6107490 |
Mouse gut feces, TVA diet (zr4773_2V3V4) |
| GSM6107491 |
Mouse gut feces, TVA diet (zr4773_3V3V4) |
| GSM6107492 |
Mouse gut feces, TVA diet (zr4773_4V3V4) |
| GSM6107493 |
Mouse gut feces, TVA diet (zr4773_5V3V4) |
| GSM6107494 |
Mouse gut feces, TVA diet (zr4773_6V3V4) |
| GSM6107495 |
Mouse gut feces, TVA diet (zr4773_7V3V4) |
| GSM6107496 |
Mouse gut feces, CON diet (zr4773_8V3V4) |
| GSM6107497 |
Mouse gut feces, CON diet (zr4773_9V3V4) |
| GSM6107498 |
Mouse gut feces, CON diet (zr4773_10V3V4) |
| GSM6107499 |
Mouse gut feces, CON diet (zr4773_11V3V4) |
| GSM6107500 |
Mouse gut feces, CON diet (zr4773_12V3V4) |
| GSM6107501 |
Mouse gut feces, CON diet (zr4773_13V3V4) |
| GSM6107502 |
Mouse gut feces, CON diet (zr4773_14V3V4) |
|
| This SubSeries is part of SuperSeries: |
| GSE202340 |
Dietary trans-vaccenic acid promotes anti-tumor immunity |
|
| Relations |
| BioProject |
PRJNA835303 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE202266_RAW.tar |
50.0 Kb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
Less...
More...