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| Status |
Public on Mar 14, 2023 |
| Title |
Transgressive and parental dominant gene expression and cytosine methylation during seed development in Brassica napus hybrids [miRNA-seq] |
| Organism |
Brassica napus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
To investigate the expression and methylation patterns of hybrid embryo development in Brassica napus, we performed pattern analysis on different developmental stages of parental and hybrid embryos
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| Overall design |
sRNA expression profiling using sRNA-seq data from parents and offspring at three developmental stages
Grant ID: 31861133016
Grant title: Genome-wide patterns of heterotic vigour associated with allopolyploid chromosome collision
Funding source: National Science Foundation project (NSFC)
Grant ID: SN14/22-1
Grant title: Genome-wide patterns of heterotic vigour associated with allopolyploid chromosome collision
Funding source: German Research Foundation (DFG)
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| Contributor(s) |
Orantes-Bonilla M, Wang H, Lee H, Li W, Hu D, Zou J, Snowdon R |
| Citation(s) |
37071201 |
| Submission date |
May 10, 2022 |
| Last update date |
May 12, 2023 |
| Contact name |
Hao Wang |
| E-mail(s) |
haowang@webmail.hzau.edu.cn
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| Phone |
18715003498
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| Organization name |
Huazhong Agricultural University
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| Department |
National Key Laboratory of Crop Genetic Improvement
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| Street address |
No. 1, Shizishan Street, Hongshan District
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| City |
Wuhan |
| ZIP/Postal code |
430070 |
| Country |
China |
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| Platforms (1) |
| GPL29911 |
Illumina NovaSeq 6000 (Brassica napus) |
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| Samples (33)
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| GSM6125639 |
G3D001,six-leaf stage,rep1 [20N1067_Rep1_L] |
| GSM6125640 |
Express617,six-leaf stage,rep1 [20N1068_Rep1_L] |
| GSM6125641 |
F1(Express617 x G3D001),six-leaf stage,rep1 [20N1070_Rep1_L] |
| GSM6125642 |
G3D001,six-leaf stage,rep2 [20N1071_Rep2_L] |
| GSM6125643 |
F1(Express617 x G3D001),six-leaf stage,rep2 [20N1073_Rep2_L] |
| GSM6125644 |
Express617,six-leaf stage,rep2 [20N1076_Rep2_L] |
| GSM6125645 |
F1(Express617 x G3D001),six-leaf stage,rep3 [20N1084_Rep3_L] |
| GSM6125646 |
Express617,six-leaf stage,rep3 [20N1087_Rep3_L] |
| GSM6125647 |
G3D001,six-leaf stage,rep3 [20N1090_Rep3_L] |
| GSM6125648 |
G3D001,15 days ovule,rep1 [20N1067_Rep1_E15] |
| GSM6125649 |
Express617,15 days ovule,rep1 [20N1068_Rep1_E15] |
| GSM6125650 |
F1(Express617 x G3D001),15 days ovule,rep1 [20N1070_Rep1_E15] |
| GSM6125651 |
G3D001,15 days ovule,rep2 [20N1071_Rep2_E15] |
| GSM6125652 |
F1(Express617 x G3D001),15 days ovule,rep2 [20N1073_Rep2_E15] |
| GSM6125653 |
Express617,15 days ovule,rep2 [20N1076_Rep2_E15] |
| GSM6125654 |
F1(Express617 x G3D001),15 days ovule,rep3 [20N1084_Rep3_E15] |
| GSM6125655 |
Express617,15 days ovule,rep3 [20N1087_Rep3_E15] |
| GSM6125656 |
G3D001,15 days ovule,rep3 [20N1090_Rep3_E15] |
| GSM6125657 |
F0(Express617 x G3D001),15 days ovule,rep1 [F0_Rep1_E15] |
| GSM6125658 |
F0(Express617 x G3D001),15 days ovule,rep2 [F0_Rep2_E15] |
| GSM6125659 |
F0(Express617 x G3D001),15 days ovule,rep3 [F0_Rep3_E15] |
| GSM6125660 |
G3D001,30 days ovule,rep1 [20N1067_Rep1_E30] |
| GSM6125661 |
Express617,30 days ovule,rep1 [20N1068_Rep1_E30] |
| GSM6125662 |
F1(Express617 x G3D001),30 days ovule,rep1 [20N1070_Rep1_E30] |
| GSM6125663 |
G3D001,30 days ovule,rep2 [20N1071_Rep2_E30] |
| GSM6125664 |
F1(Express617 x G3D001),30 days ovule,rep2 [20N1073_Rep2_E30] |
| GSM6125665 |
Express617,30 days ovule,rep2 [20N1076_Rep2_E30] |
| GSM6125666 |
F1(Express617 x G3D001),30 days ovule,rep3 [20N1084_Rep3_E30] |
| GSM6125667 |
Express617,30 days ovule,rep3 [20N1087_Rep3_E30] |
| GSM6125668 |
G3D001,30 days ovule,rep3 [20N1090_Rep3_E30] |
| GSM6125669 |
F0(Express617 x G3D001),30 days ovule,rep1 [F0_Rep1_E30] |
| GSM6125670 |
F0(Express617 x G3D001),30 days ovule,rep2 [F0_Rep2_E30] |
| GSM6125671 |
F0(Express617 x G3D001),30 days ovule,rep3 [F0_Rep3_E30] |
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| This SubSeries is part of SuperSeries: |
| GSE202610 |
Transgressive and parental dominant gene expression and cytosine methylation during seed development in Brassica napus hybrids |
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| Relations |
| BioProject |
PRJNA836774 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE202608_Counts.txt.gz |
4.7 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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