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Series GSE205034 Query DataSets for GSE205034
Status Public on May 31, 2022
Title Regulation of erythropoiesis in the spleen by Desert Hedgehog (Dhh)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Dhh negatively regulates multiple stages of erythrocyte differentiation. In Dhh-deficient bone marrow, the common myeloid progenitor (CMP) population was increased, but differentiation from CMP to granulocyte/macrophage progenitor was decreased, and the mature granulocyte population was decreased, compared with wild-type (WT). In contrast, differentiation from CMP to megakaryocyte/erythrocyte progenitor was increased, and the megakaryocyte/erythrocyte progenitor population was increased.  In Dhh-deficient spleen and bone marrow, BFU-Es and erythroblast populations were increased compared with WT. During recovery of hematopoiesis after irradiation, and under conditions of stress-induced erythropoiesis, erythrocyte differentiation was accelerated in both spleen and bone marrow of Dhh-deficient mice compared with WT. To investigate possible mechanisms for its regulation of erythropoiesis we carried out RNAsequencing on Facs-sorted erythroblast population II (CD71+Ter119+) cells from Dhh-/-, Dhh+/- and WR mice.
 
Overall design Splenocyte suspensions were prepared from 4 week old Wildtype (WT), Dhh heterozygous (Dhh+/-) and Dhh knockout (Dhh-/-) mice spleen.  Cells were stained against Ter119 and CD71 and facs sorted to purify CD71+Ter119+ cells.  RNA was extracted from this CD71+Ter119+ cells defined as erythroblast population II.
 
Contributor(s) Crompton T, Norris S
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Submission date May 28, 2022
Last update date May 31, 2022
Contact name Tessa Crompton
Organization name UCL
Department Immunobiology
Street address 30 Guilford Street
City London
ZIP/Postal code WC1N 1EH
Country United Kingdom
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (9)
GSM6204396 Wildtype Rep 1
GSM6204397 Heterozygous Rep 1
GSM6204398 Knockout Rep 1
Relations
BioProject PRJNA843316

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Supplementary file Size Download File type/resource
GSE205034_abundance-values.csv.gz 809.5 Kb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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