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Series GSE205511 Query DataSets for GSE205511
Status Public on Jun 30, 2023
Title Molecular and functional features of synucleinopathy-associated astrocytes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Astrocyte (AC) involvement is a common neuropathological feature in human synucleinopathy-associated neurodegeneration. However, our understanding of the in vivo characteristics of reactive ACs in synucleinopathy remained limited. Here we report the transcriptomic and functional features of a unique synucleinopathy-associated AC (SAA) subtype in a mouse model. SAAs share a convergent transcriptomic state across synucleinopathy-laden brain regions, and are at least partially reliant on microglia for their phenotypic maintenance in vivo. Intravital imaging revealed that an upregulation of the excitatory amino acid transporter 2 (EAAT2) in synucleinopathy-affected ACs is associated with depressed neuronal activities. This is potentially mediated via increased AC glutamate uptake, as pharmacological induction of EAAT2 reproduced the same effect. With cross-species comparative analysis, we showed that the core SAA transcriptomic features are present in human aged and synucleinopathy-affected midbrain ACs, while important distinct characteristics also exist. Collectively, our results uncovered complex reactive AC changes that likely play important adaptive roles in synucleinopathy.
 
Overall design Mouse brain frontal cortex and midbran two regions from Huα-Syn(A53T) and wildtype mice group(3 mice each group) were acquired to perform scRNAseq.
 
Contributor(s) Ko H, Li Z
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Submission date Jun 06, 2022
Last update date Jun 30, 2023
Contact name Ho Ko
Organization name The Chinese University of Hong Kong
Department Medicine and Therapeutics
Lab Ko Lab, Division of Neurology
Street address 30-32 Ngan Shing Street, Shatin
City Hong Kong
ZIP/Postal code 999077
Country China
 
Platforms (1)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (4)
GSM6214030 Frontal cortex, wildtype
GSM6214031 Midbrain, wildtype
GSM6214032 Frontal cortex, transgenic
Relations
BioProject PRJNA846176

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE205511_ast_fc_barcodes.tsv.gz 44.8 Kb (ftp)(http) TSV
GSE205511_ast_fc_features.tsv.gz 140.2 Kb (ftp)(http) TSV
GSE205511_ast_fc_matrix.mtx.gz 83.1 Mb (ftp)(http) MTX
GSE205511_ast_mb_barcodes.tsv.gz 51.6 Kb (ftp)(http) TSV
GSE205511_ast_mb_features.tsv.gz 142.8 Kb (ftp)(http) TSV
GSE205511_ast_mb_matrix.mtx.gz 88.5 Mb (ftp)(http) MTX
GSE205511_fc_meta.tsv.gz 271.5 Kb (ftp)(http) TSV
GSE205511_mb_meta.tsv.gz 315.4 Kb (ftp)(http) TSV
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Processed data are available on Series record

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