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Series GSE208151 Query DataSets for GSE208151
Status Public on Feb 08, 2023
Title Protein farnesylation is involved in the adaptation of Arabidopsis to nitrogen starvation
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary ngs2020_24_era-nitrogen-What genes are affected in the era1 mutant compared to the WT?-Characterize the effect of nitrogen nutrition (0 mM, 2mM and 10 mM NH4NO3) on development and metabolism in era1 and WT at the rosette stage at the onset of flower bud. Library construction with Quantseq 3seq sequencing
 
Overall design 18 samples with 3 biological replicats. dose response,genotype and ecotype comparison
Web link http://tools.ips2.u-psud.fr/CATdb
 
Contributor(s) Pichon O, Bellenger L, Launay-Avon A, Delannoy E
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 13, 2022
Last update date Feb 10, 2023
Contact name VĂ©ronique BRUNAUD
E-mail(s) veronique.brunaud@inrae.fr
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (18)
GSM6338177 WT_N0_1
GSM6338178 WT_N0_2
GSM6338179 WT_N0_3
Relations
BioProject PRJNA858474

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE208151_RAW.tar 2.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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