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| Status |
Public on Feb 03, 2023 |
| Title |
Nab6 and Mrn1 regulate the expression of cell wall mRNAs in budding yeast |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
The fungal cell wall provides protection and structure to cells, and serves as an important target for antifungal compounds. The cell wall integrity (CWI) signaling pathway regulates the transcriptional response to various cell wall stresses, but emerging evidence suggests posttranscriptional pathways play an important complementary role. Here, we show that the RNA-binding proteins (RBPs) Mrn1 and Nab6 specifically target the 3′ UTRs of a largely overlapping set of cell wall-associated mRNAs. These mRNAs are downregulated in the absence of Nab6, indicating that Nab6 directly or indirectly stabilizes its target mRNAs. We further show that Nab6 acts in parallel to conventional CWI signaling to maintain adequate expression of cell wall mRNAs. Cells lacking both pathways are hypersensitive to antifungal compounds targeting the cell wall, while deletion of MRN1 partially alleviates the growth and molecular phenotypes associated with the Dnab6 strain. Taken together, our results uncover a novel posttranscriptional pathway which mediates resistance to cell wall stress and antifungal compounds.
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| Overall design |
There are 4 CRAC datasets and 50 RNAseq datasets. The CRAC datasets were generated using affinity tagged versions of Mrn1 and Nab6 under standard ('control') conditions in otherwise wild type cells. The RNAseq experiments were prepared from wild type, Dmrn1, Dnab6, Dslt2, and Dnab6Dslt2 cells before and after treatment with 2 µg/mL Congo Red (0, 1, 2, and 4hr). In addition, wild type, Dmrn1, Dnab6, and Dmrn1Dnab6 cells were treated with 60µg/mL Congo Red (0 and 2 hr).
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| Contributor(s) |
Bresson S, Shchepachev V, Tollervey D |
| Citation(s) |
36862555 |
| Submission date |
Aug 04, 2022 |
| Last update date |
May 05, 2023 |
| Contact name |
Stefan Bresson |
| E-mail(s) |
stefan.bresson@gmail.com
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| Organization name |
University of Edinburgh
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| Department |
Wellcome Trust Centre for Cell Biology
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| Lab |
Tollervey Lab
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| Street address |
Max Born Crescent, Swann 5.1
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| City |
Edinburgh |
| State/province |
Scotland |
| ZIP/Postal code |
EH9 3BF |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL19756 |
Illumina NextSeq 500 (Saccharomyces cerevisiae) |
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| Samples (54)
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| Relations |
| BioProject |
PRJNA866160 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE210558_RAW.tar |
1.9 Gb |
(http)(custom) |
TAR (of BEDGRAPH, BW, TXT) |
| GSE210558_Saccharomyces_cerevisiae_EF4.74_introns_removed.fasta.gz |
3.3 Mb |
(ftp)(http) |
FASTA |
| GSE210558_intronless_genome_annotation.gtf.gz |
245.8 Kb |
(ftp)(http) |
GTF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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