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| Status |
Public on Feb 13, 2023 |
| Title |
C2-signature in Moricandia under limited soil water availability |
| Organisms |
Moricandia arvensis; Moricandia moricandioides; Moricandia suffruticosa |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Transcriptome profiling in response to water stress and rewatering of Moricandia species with C3 and C3-C4 intermediate photosynthesis.
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| Overall design |
Comparative mRNA accumulation profiling of 3 Moricandia species under drought and rewatering. Samplings were performed on the basis of stomatal conductance (Gs) values during the water deficit treatment: T0: 100% Gs; T1: 50% Gs; T2: 10% Gs; RW: 100% Gs after rewatering.
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| Contributor(s) |
Pinheiro C, Haworth DM, Marino G, Emiliani G, Centritto M |
| Citation(s) |
36835502 |
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| Submission date |
Aug 05, 2022 |
| Last update date |
Feb 25, 2023 |
| Contact name |
Giovanni Emiliani |
| E-mail(s) |
giovanni.emiliani@ipsp.cnr.it
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| Organization name |
IPSP-CNR
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| Street address |
vai Madonna del Piano, 10
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| City |
Sesto Fiorentino |
| State/province |
Firenze |
| ZIP/Postal code |
50019 |
| Country |
Italy |
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| Platforms (3) |
| GPL22476 |
Illumina HiSeq 2500 (Moricandia moricandioides) |
| GPL22477 |
Illumina HiSeq 2500 (Moricandia arvensis) |
| GPL22478 |
Illumina HiSeq 2500 (Moricandia suffruticosa) |
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| Samples (78)
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| GSM6434313 |
Moricandia arvensis, T0, control, biol rep A1 |
| GSM6434314 |
Moricandia arvensis, T0, control, biol rep A4 |
| GSM6434315 |
Moricandia arvensis, T0, control, biol rep A45 |
| GSM6434316 |
Moricandia arvensis, T0, control, biol rep A46 |
| GSM6434317 |
Moricandia arvensis, T0, control, biol rep A48 |
| GSM6434318 |
Moricandia arvensis, T1, control, biol rep A3c |
| GSM6434319 |
Moricandia arvensis, T1, control, biol rep A11c |
| GSM6434320 |
Moricandia arvensis, T1, control, biol rep A12c |
| GSM6434321 |
Moricandia arvensis, T1, control, biol rep A14c |
| GSM6434322 |
Moricandia arvensis, T1, water stress, biol rep A34s |
| GSM6434323 |
Moricandia arvensis, T2, control, biol rep A9c |
| GSM6434324 |
Moricandia arvensis, T2, control, biol rep A15c |
| GSM6434325 |
Moricandia arvensis, T2, control, biol rep A24c |
| GSM6434326 |
Moricandia arvensis, T2, control, biol rep A16c |
| GSM6434327 |
Moricandia arvensis, T2, control, biol rep A22c |
| GSM6434328 |
Moricandia arvensis, T2, water stress, biol rep A28s |
| GSM6434329 |
Moricandia arvensis, T2, water stress, biol rep A35s |
| GSM6434330 |
Moricandia arvensis, T2, water stress, biol rep A39s |
| GSM6434331 |
Moricandia arvensis, T2, water stress, biol rep A37s |
| GSM6434332 |
Moricandia arvensis, T2, water stress, biol rep A44s |
| GSM6434333 |
Moricandia arvensis, Re-Watering, control, biol rep A6c |
| GSM6434334 |
Moricandia arvensis, Re-Watering, control, biol rep A8c |
| GSM6434335 |
Moricandia arvensis, Re-Watering, control, biol rep A10c |
| GSM6434336 |
Moricandia arvensis, Re-Watering, control, biol rep A13c |
| GSM6434337 |
Moricandia arvensis, Re-Watering, control, biol rep A17c |
| GSM6434338 |
Moricandia arvensis, Re-Watering, water stress, biol rep A30s |
| GSM6434339 |
Moricandia arvensis, Re-Watering, water stress, biol rep A38s |
| GSM6434340 |
Moricandia arvensis, Re-Watering, water stress, biol rep A40s |
| GSM6434341 |
Moricandia arvensis, Re-Watering, water stress, biol rep A42s |
| GSM6434342 |
Moricandia suffruticosa, T0, control, biol rep S38 |
| GSM6434343 |
Moricandia suffruticosa, T0, control, biol rep S39 |
| GSM6434344 |
Moricandia suffruticosa, T0, control, biol rep S42 |
| GSM6434345 |
Moricandia suffruticosa, T0, control, biol rep S43 |
| GSM6434346 |
Moricandia suffruticosa, T1, control, biol rep S18c |
| GSM6434347 |
Moricandia suffruticosa, T1, control, biol rep S24c |
| GSM6434348 |
Moricandia suffruticosa, T1, control, biol rep S26c |
| GSM6434349 |
Moricandia suffruticosa, T1, control, biol rep S35c |
| GSM6434350 |
Moricandia suffruticosa, T1, water stress, biol rep S10s |
| GSM6434351 |
Moricandia suffruticosa, T1, water stress, biol rep S13s |
| GSM6434352 |
Moricandia suffruticosa, T1, water stress, biol rep S15s |
| GSM6434353 |
Moricandia suffruticosa, T2, control, biol rep S28c |
| GSM6434354 |
Moricandia suffruticosa, T2, control, biol rep S33c |
| GSM6434355 |
Moricandia suffruticosa, T2, control, biol rep S36c |
| GSM6434356 |
Moricandia suffruticosa, T2, water stress, biol rep S2s |
| GSM6434357 |
Moricandia suffruticosa, T2, water stress, biol rep S4s |
| GSM6434358 |
Moricandia suffruticosa, T2, water stress, biol rep S5s |
| GSM6434359 |
Moricandia suffruticosa, T2, water stress, biol rep S8s |
| GSM6434360 |
Moricandia suffruticosa, Re-Watering, control, biol rep S5c |
| GSM6434361 |
Moricandia suffruticosa, Re-Watering, control, biol rep S6c |
| GSM6434362 |
Moricandia suffruticosa, Re-Watering, control, biol rep S7c |
| GSM6434363 |
Moricandia suffruticosa, Re-Watering, water stress, biol rep S1s |
| GSM6434364 |
Moricandia suffruticosa, Re-Watering, water stress, biol rep S2s |
| GSM6434365 |
Moricandia suffruticosa, Re-Watering, water stress, biol rep S3s |
| GSM6434366 |
Moricandia suffruticosa, Re-Watering, water stress, biol rep S4s |
| GSM6434367 |
Moricandia moricandioides, T0, control, biol rep M1c |
| GSM6434368 |
Moricandia moricandioides, T0, control, biol rep M3s |
| GSM6434369 |
Moricandia moricandioides, T0, control, biol rep M4s |
| GSM6434370 |
Moricandia moricandioides, T0, control, biol rep M12c |
| GSM6434371 |
Moricandia moricandioides, T1, control, biol rep M5c |
| GSM6434372 |
Moricandia moricandioides, T1, control, biol rep M6c |
| GSM6434373 |
Moricandia moricandioides, T1, control, biol rep M9c |
| GSM6434374 |
Moricandia moricandioides, T1, control, biol rep M10c |
| GSM6434375 |
Moricandia moricandioides, T1, water stress, biol rep M7s |
| GSM6434376 |
Moricandia moricandioides, T1, water stress, biol rep M8s |
| GSM6434377 |
Moricandia moricandioides, T1, water stress, biol rep M12s |
| GSM6434378 |
Moricandia moricandioides, T2, control, biol rep M14c |
| GSM6434379 |
Moricandia moricandioides, T2, control, biol rep M16c |
| GSM6434380 |
Moricandia moricandioides, T2, water stress, biol rep M17s |
| GSM6434381 |
Moricandia moricandioides, T2, water stress, biol rep M19s |
| GSM6434382 |
Moricandia moricandioides, T2, water stress, biol rep M20s |
| GSM6434383 |
Moricandia moricandioides, Re-Watering, control, biol rep M21c |
| GSM6434384 |
Moricandia moricandioides, Re-Watering, control, biol rep M22c |
| GSM6434385 |
Moricandia moricandioides, Re-Watering, control, biol rep M23c |
| GSM6434386 |
Moricandia moricandioides, Re-Watering, control, biol rep M24c |
| GSM6434387 |
Moricandia moricandioides, Re-Watering, water stress, biol rep M25s |
| GSM6434388 |
Moricandia moricandioides, Re-Watering, water stress, biol rep M26s |
| GSM6434389 |
Moricandia moricandioides, Re-Watering, water stress, biol rep M27s |
| GSM6434390 |
Moricandia moricandioides, Re-Watering, water stress, biol rep M28s |
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| Relations |
| BioProject |
PRJNA866552 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE210653_RAW.tar |
25.9 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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