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Series GSE210734 Query DataSets for GSE210734
Status Public on Mar 20, 2023
Title RNA-seq analysis of total RNA from inflorescence stems of Arabidopsis Col-0, ccr-1, fer-4 and ccr-1/fer-4
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary A. thaliana lines with reduced lignin content through down-regulation of the lignin biosynthesis enzymes cinnamoyl CoA reductase (CCR) exhibit extensive cell wall remodeling which results in the release of a mixture of pectic oligosaccharide elicitors of pathogenesis-related (PR) protein gene expression through the salicylic acid signaling pathway. Loss of function of FERONIA, a CrRLK1-like subfamily receptor-like kinase resulted in loss of PR-1, -2 and- 5 gene activation in stems of the ccr1/fer-4 double mutant.
Overall design We utilized RNA-seq analysis of total RNA from inflorescence stems of WT, ccr-1, fer-4 and ccr-1/fer-4 to determine the extent to which loss of function of FERONIA affected the expression of other genes that are up-regulated in ccr1-3.
Contributor(s) Dixon RA, Liu C, Rao X
Citation(s) 36897948
Submission date Aug 08, 2022
Last update date Mar 20, 2023
Contact name Chang Liu
Organization name University of North Texas
Street address 1155 Union Circle #311428
City Denton
ZIP/Postal code 76203-5017
Country USA
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (12)
GSM6436064 WT bio rep 1
GSM6436065 WT bio rep 2
GSM6436066 WT bio rep 3
BioProject PRJNA867337

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Supplementary file Size Download File type/resource
GSE210734_All_samples_FPKM_060121.xlsx 2.7 Mb (ftp)(http) XLSX
GSE210734_DEG_ccr_wt_and_cf_ccr.xlsx 97.3 Kb (ftp)(http) XLSX
GSE210734_Data_report_Arabidopsis_LC_060121.xlsx 10.9 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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