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Status |
Public on Jan 31, 2023 |
Title |
Absence of the eisosome causes general transcriptome remodeling of the yeast cell |
Organism |
Saccharomyces cerevisiae |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
We investigated the effect of the absence of the eisosome on the overall yeast transcriptome by gene expression profiling analysis. We used data obtained from RNA-seq (polyA enrichment of total RNA isolates) of 3 different strains, specifically wild type (BY4742), a strain missing PIL1 gene that forms eisosome remanants instead of eisosome and our newly described seg1Δnce102Δpil1Δ strain, which forms neither eisosomes, nor eisosome remnants, even in the response to stress.
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Overall design |
Comparative gene expression profiling analysis of RNA-seq data for wild type (BY4742), pil1Δ and seg1Δnce102Δpil1Δ cells grown in SC for 24 hours.
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Web link |
https://doi.org/10.1242/jcs.260554
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Contributor(s) |
Zahumensky J |
Citation(s) |
36601791 |
Submission date |
Aug 19, 2022 |
Last update date |
May 02, 2023 |
Contact name |
Jakub Zahumensky |
E-mail(s) |
jakub.zahumensky@iem.cas.cz
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Organization name |
Institute of Experimental Medicine, CAS
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Department |
Functional Organization of Biomembranes
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Street address |
Videnska 1083
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City |
Prague |
ZIP/Postal code |
14220 |
Country |
Czech Republic |
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Platforms (1) |
GPL19756 |
Illumina NextSeq 500 (Saccharomyces cerevisiae) |
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Samples (9)
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Relations |
BioProject |
PRJNA871253 |