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Series GSE211649 Query DataSets for GSE211649
Status Public on Jan 31, 2023
Title Absence of the eisosome causes general transcriptome remodeling of the yeast cell
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Summary We investigated the effect of the absence of the eisosome on the overall yeast transcriptome by gene expression profiling analysis. We used data obtained from RNA-seq (polyA enrichment of total RNA isolates) of 3 different strains, specifically wild type (BY4742), a strain missing PIL1 gene that forms eisosome remanants instead of eisosome and our newly described seg1Δnce102Δpil1Δ strain, which forms neither eisosomes, nor eisosome remnants, even in the response to stress.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for wild type (BY4742), pil1Δ and seg1Δnce102Δpil1Δ cells grown in SC for 24 hours.
Web link https://doi.org/10.1242/jcs.260554
 
Contributor(s) Zahumensky J
Citation(s) 36601791
Submission date Aug 19, 2022
Last update date May 02, 2023
Contact name Jakub Zahumensky
E-mail(s) jakub.zahumensky@iem.cas.cz
Organization name Institute of Experimental Medicine, CAS
Department Functional Organization of Biomembranes
Street address Videnska 1083
City Prague
ZIP/Postal code 14220
Country Czech Republic
 
Platforms (1)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
Samples (9)
GSM6482029 wildtype, biol rep 1
GSM6482030 wildtype, biol rep 2
GSM6482031 wildtype, biol rep 3
Relations
BioProject PRJNA871253

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211649_DESeqDataSet.tsv.gz 480.6 Kb (ftp)(http) TSV
GSE211649_DESeqTransform.tsv.gz 479.5 Kb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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