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Series GSE212607 Query DataSets for GSE212607
Status Public on Sep 03, 2023
Title Tryptophan as a miR team organizer prevents colon cancer liver metastasis [small intestine]
Platform organism synthetic construct
Sample organism Mus musculus
Experiment type Non-coding RNA profiling by array
Summary Tryptophan treatment play a significant role in miR expression. We have characterized the miR expression network through miR-on-chip profiling of the mouse treated with or without tryptophan.
In this dataset, we include the expression data from mouse small intestine and colon tissue treated with or without tryptophan.
Overall design C57BL/6 mice are randomly devided into two groups. Each group of mice (n=8) were respectively fed with Trp depleted diet (TrpD, 0% tryptophan, w/w) or a paired diet (PD, 1.2% tryptophan, w/w). Mice tissue were dissected and pooled as two samples for each treatment.
Contributor(s) Fangyi X, Sabine W
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Submission date Sep 02, 2022
Last update date Sep 03, 2023
Contact name Fangyi Xu
Phone 3462400801
Organization name University of Louisville
Department BCC cancer center
Lab Zhang
Street address 505 S Hancock street
City Louisville
State/province Kentucky
ZIP/Postal code 40202
Country USA
Platforms (1)
GPL21572 [miRNA-4] Affymetrix Multispecies miRNA-4 Array [ProbeSet ID version]
Samples (4)
GSM6538358 Small intestine from mice treated with TrpD [HZ_B6_TrpD_SI_Tis_1]
GSM6538359 Small intestine from mice treated with TrpD [HZ_B6_TrpD_SI_Tis_2]
GSM6538360 Small intestine from mice treated with PD [HZ_B6_PD_SI_Tis_1]
BioProject PRJNA876251

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE212607_RAW.tar 3.1 Mb (http)(custom) TAR (of CEL)
GSE212607_miR_chip_SI-data_processed_Fold_change_more_than_2_.xlsx 17.4 Kb (ftp)(http) XLSX
Processed data included within Sample table
Processed data are available on Series record

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