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Series GSE212826 Query DataSets for GSE212826
Status Public on Apr 07, 2023
Title Gene expression profile of Arabidopsis root tip cells exposed to 2 hours of 50┬ÁM jasmonate
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary We used single cell RNA sequencing (scRNA-seq) to analyze the response to jasmonate treatment in root tips at the single cell level.
 
Overall design protoplast were generated from root tips then cells were isolated by Fluorescence-activated cell sorting (FACS) according to the presence or absence of DAPI signal and analyzed using scRNAseq.
 
Contributor(s) Ritter A, Goossens A
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Submission date Sep 07, 2022
Last update date Apr 09, 2023
Contact name Jana Roels
E-mail(s) jana.roels@vib.be, niels.vandamme@vib.be
Organization name VIB
Department VIB Single cell core
Street address Technologiepark-Zwijnaarde 71
City Zwijnaarde
ZIP/Postal code 9052
Country Belgium
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (1)
GSM6553071 JA-2H
Relations
BioProject PRJNA877588

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE212826_RAW.tar 31.7 Mb (http)(custom) TAR (of H5)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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