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Series GSE214171 Query DataSets for GSE214171
Status Public on Sep 27, 2022
Title Real-time quantitative PCR analysis of white spruce (Picea glauca) families with different growth rates
Organism Picea glauca
Experiment type Expression profiling by RT-PCR
Summary Tree improvement programs select genotypes for faster growth, at both early and late stages, to increase yields over unimproved material, and the improvement is frequently attributed to genetic control in growth parameters among genotypes. Underutilized genetic variability among genotypes also has the potential to ensure future gains are possible. However, the genetic variation in growth, physiology and hormone control among genotypes generated from different breeding strategies has not been well characterized in conifers. We assessed growth, biomass, gas exchange, gene expression and hormone levels in white spruce seedlings obtained from three different breeding strategies (controlled crosses, polymix pollination, open pollination) using parents grafted into a clonal seed orchard in Alberta, Canada. A pedigree-based best linear unbiased prediction (ABLUP) mixed model was implemented to quantify variability and narrow-sense heritability for target traits and the levels of several hormones and expression of gibberellin-related genes in apical internodes were also determined. Over the first 2-years of development, the estimated heritabilities for height, volume, total dry biomass, above ground dry biomass, root:shoot ratio and root length, varied between 0.10 and 0.21, with height having the highest value. The ABLUP values showed large genetic variability in growth and physiology traits both between families from different breeding strategies, and within families. The principal component analysis showed that developmental and hormonal traits explained 44.2% and 29.4% of the total phenotypic variation between the three different breeding strategies and two growth groups. In general, controlled crosses from the fast growth group showed the best apical growth, with more accumulation of indole-3-acetic acid, abscisic acid, phaseic acid, and a 4-fold greater gene expression of PgGA3ox1 in genotypes from controlled crosses versus those from open pollination, but in some cases, open-pollination from the fast and slow growth groups showed the best root development, higher water use efficiency (iWUE and δ13C) and more accumulation of zeatin and isopentenyladenosine. In conclusion, tree domestication can lead to trade-offs between growth, carbon allocation, photosynthesis, hormone levels and gene expression, and we encourage the use of this phenotypic variation identified in improved and unimproved trees to advance white spruce tree improvement programs.
 
Overall design The experiment was a randomized complete block design with a total of 23 families, from three different breeding strategies (CC,PM, OP), each families with three repetitions (total samples=69). CC= controlled crosses, PM= polymix pollination, OP=open pollination. OP is the control.
For the qPCR gene expression profiling, an equal amount of total RNA from each sample was pooled e gene expression analysis. To set up the plates, three technical replicates were used for the PgGA2ox, PgGA3ox and PgGA20ox genes, and two technical replicates were used for PgDELLA and PgGID genes.
 
Contributor(s) Galeano E, Thomas BR
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Submission date Sep 26, 2022
Last update date Sep 27, 2022
Contact name Esteban Galeano
E-mail(s) esteban.galeano@msstate.edu
Phone 6623257782
Organization name Mississippi State University
Street address 775 Stone Blvd, 351 Thompson Hall, Mississippi State
City Starkville
State/province Mississippi
ZIP/Postal code 39762-9681
Country USA
 
Platforms (1)
GPL32694 ABI PRISM 7900HT Sequence Detection System (Applied Biosystems, Waltham, USA)
Samples (69)
GSM6600510 927_PM_Repetition_1 [SAMPLE 1]
GSM6600511 927_OP_Repetition_1 [SAMPLE 2]
GSM6600512 927_OP_Repetition_2 [SAMPLE 3]
Relations
BioProject PRJNA884299

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE214171_rt_pcr_results.xlsx 33.7 Kb (ftp)(http) XLSX
Processed data are available on Series record

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