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Series GSE2145 Query DataSets for GSE2145
Status Public on Apr 01, 2005
Title 30% O2 vs PS 10W/m2
Platform organism Cereibacter sphaeroides 2.4.1
Sample organism Cereibacter sphaeroides
Experiment type Expression profiling by array
Summary Comparison of wild-type (2.4.1) R. sphaeroides gene expression in 30% O2 aerobic respiration vs. photosynthesis 10W/m2 light, to identify candidate photosynthesis genes.
RNA preparation: pellet cells from exponential phase cultures using 5% phenol in ethanol stop solution; lysozyme + SDS to lyse; phenol/chloroform extraction + DNase treatment + RNeasy kit clean up. Manuscript in preparation.

The below normalized data was generated using GeneSpring software with the following settings:

A data:
Data Transformation: set all values less than 0.01 to 0.01
Per Chip: normalize to 50th percentile, and then
Per Gene: normalize to median

B data:
Data Transformation: set all values less than 0.01 to 0.01
Per Chip: normalize to 50th percentile
Values from independent replicates were averaged
Keywords = Rhodobacter sphaeroides
Keywords = photosynthesis
Keywords = purple bacteria
Keywords: other
 
 
Contributor(s) Tavano CL, Donohue TJ, Anthony JW
Citation(s) 16030219
Submission date Jan 11, 2005
Last update date Apr 26, 2014
Contact name Timothy J Donohue
E-mail(s) tdonohue@bact.wisc.edu
Phone 608-265-8465
Organization name University of Wisconsin - Madison
Department Bacteriology
Lab Timothy Donohue
Street address 1552 University Avenue
City Madison
State/province WI
ZIP/Postal code 53726
Country USA
 
Platforms (1)
GPL162 [uwyRhodo1a] Rhodobacter sphaeroides 2.4.1 GeneChip
Samples (7)
GSM38773 2.4.1-1
GSM38774 2.4.1-3
GSM38775 P3
Relations
BioProject PRJNA91399

Normalized data header descriptions
Systematic Name
A - 30% O2
A - PS 10W/m2
B - 30% O2
B - PS 10W/m2

Data table
Systematic Name A - 30% O2 A - PS 10W/m2 B - 30% O2 B - PS 10W/m2
2.4.3 1.076 0.841 0.0834 0.0652
2.4.3_01 NO DATA NO DATA NO DATA NO DATA
2.4.3_02 NO DATA NO DATA NO DATA NO DATA
AFFX-BioB-3 1.192 0.924 0.0245 0.019
AFFX-BioB-5 1.212 1.129 0.145 0.135
AFFX-BioB-M 0.908 0.93 0.0932 0.0954
AFFX-BioC-3 1.493 0.944 0.0427 0.027
AFFX-BioC-5 0.827 1.372 0.0417 0.0691
AFFX-BioDn-3 1.018 2.474 0.052 0.126
AFFX-BioDn-5 1.051 1.181 0.0242 0.0272
AFFX-CreX-3 1.339 0.979 0.0625 0.0457
AFFX-CreX-5 0.873 0.95 0.0316 0.0344
AFFX-DapX-3 0.872 1.593 0.0149 0.0283
AFFX-DapX-5 0.81 0.965 0.018 0.02
AFFX-DapX-M 0.255 0.225 0.01* 0.0102
AFFX-LysX-3 0.342 0.287 0.01* 0.0118
AFFX-LysX-5 0.071 0.0836 0.01* 0.0116
AFFX-LysX-M 0.685 0.949 0.0284 0.0318
AFFX-PheX-3 1.014 1.22 0.0173 0.0209
AFFX-PheX-5 0.563 0.828 0.0151 0.0157

Total number of rows: 5003

Table truncated, full table size 159 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE2145_RAW.tar 10.0 Mb (http)(custom) TAR (of CEL, RPT)

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