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Series GSE216655 Query DataSets for GSE216655
Status Public on Mar 19, 2023
Title The study of SWI/SNF subunits and other transcription factors deposition in asynchronous and mitotic mESCs and cells released from mitosis II
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We conduct ATAC-seq in SMARCE1 MD/MD(R42A) after mitotic release 90 min in either DMSO treated or BRG1 inhibitor BRM014 treated conditions
 
Overall design Examination of chromatin accessibility in mitotically degraded SMARCE1 and control on either DMSO or BRG1 inhibitor BRM014 treated ES cells.
 
Contributor(s) ZHU Z, CHEN X
Citation(s) 37225980
Submission date Oct 26, 2022
Last update date Jun 02, 2023
Contact name Zhexin Zhu
E-mail(s) zhexin.zhu@gmail.com
Organization name St Jude Children's Research Hospital
Street address 262 Danny Thomas Pl
City Memphis
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (8)
GSM6685362 Smarce1 - MD (R42A) DMSO release 90min ATAC rep1
GSM6685363 Smarce1 - MD (R42A) DMSO release 90min ATAC rep2
GSM6685364 Smarce1 - MD DMSO release 90min ATAC rep1
This SubSeries is part of SuperSeries:
GSE189563 Mitotic bookmarking by SWI/SNF subunits
Relations
BioProject PRJNA894697

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216655_RAW.tar 2.3 Gb (http)(custom) TAR (of BED, BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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