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Series GSE216657 Query DataSets for GSE216657
Status Public on Mar 19, 2023
Title The study of SMARCE1 and SOX2 deposition in DMSO or BRM014 treated Smarce1-MD(R42A) and Smarce1-MD cells at 90 min after releasing from mitosis.
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We executed CUT&RUN-seq for SMARCE1 and SOX2 in BRG1 inhibitor BRM014 treated ,in MD or MD mutatnt mouse embryonic stem cells at 90 min from mitotic release.
 
Overall design Examination of SOX2 and BAF57 binding in DMSO or BRM014 treated Smarce1-MD(R42A) and Smarce1-MD cells at 90 min after releasing from mitosis.
 
Contributor(s) ZHU Z, CHEN X
Citation(s) 37225980
Submission date Oct 26, 2022
Last update date Jun 02, 2023
Contact name Zhexin Zhu
E-mail(s) zhexin.zhu@gmail.com
Organization name St Jude Children's Research Hospital
Street address 262 Danny Thomas Pl
City Memphis
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (24)
GSM6685394 Smarce1-MD #09 DMSO_IgG_2433148
GSM6685395 Smarce1-MD #09 DMSO_SOX2_2433149
GSM6685396 Smarce1-MD #09 DMSO_BAF57_2433150
This SubSeries is part of SuperSeries:
GSE189563 Mitotic bookmarking by SWI/SNF subunits
Relations
BioProject PRJNA894699

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216657_RAW.tar 12.2 Gb (http)(custom) TAR (of BW, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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