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GEO accession:
Series GSE216661
Query DataSets for GSE216661
Status
Public on Mar 19, 2023
Title
The study of chromatin occupancy other mitotically bound factors upon the mitotic depletion of SMARCE1 in mouse ES cells.
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
We executed CUT&RUN-seq for SOX2, ESRRB, and EZH2 upon the mitotic depletion of SMARCE1 in mouse ES cells.
Overall design
Examination of SOX2, ESRRB and EZH2 binding in DMSO or 5-Ph-IAA treated Smarce1-AID cells at 30 minutes after mitotic release.
Contributor(s)
ZHU Z
,
CHEN X
Citation(s)
37225980
Submission date
Oct 26, 2022
Last update date
Jun 02, 2023
Contact name
Zhexin Zhu
E-mail(s)
zhexin.zhu@gmail.com
Organization name
St Jude Children's Research Hospital
Street address
262 Danny Thomas Pl
City
Memphis
ZIP/Postal code
38105
Country
USA
Platforms (1)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (20)
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GSM6685436
AID_dmso_30min_IgG_rep01.CnR
GSM6685437
AID_dmso_30min_Sox2_rep01.CnR
GSM6685438
AID_dmso_30min_Esrrb_rep01.CnR
GSM6685439
AID_dmso_30min_Ezh2_rep01.CnR
GSM6685440
AID_dmso_30min_baf57_rep01.CnR
GSM6685441
AID_dmso_30min_IgG_rep02.CnR
GSM6685442
AID_dmso_30min_Sox2_rep02.CnR
GSM6685443
AID_dmso_30min_Esrrb_rep02.CnR
GSM6685444
AID_dmso_30min_Ezh2_rep02.CnR
GSM6685445
AID_dmso_30min_baf57_rep02.CnR
GSM6685446
AID_iaa_30min_IgG_rep01.CnR
GSM6685447
AID_iaa_30min_Sox2_rep01.CnR
GSM6685448
AID_iaa_30min_Esrrb_rep01.CnR
GSM6685449
AID_iaa_30min_Ezh2_rep01.CnR
GSM6685450
AID_iaa_30min_baf57_rep01.CnR
GSM6685451
AID_iaa_30min_IgG_rep02.CnR
GSM6685452
AID_iaa_30min_Sox2_rep02.CnR
GSM6685453
AID_iaa_30min_Esrrb_rep02.CnR
GSM6685454
AID_iaa_30min_Ezh2_rep02.CnR
GSM6685455
AID_iaa_30min_baf57_rep02.CnR
This SubSeries is part of SuperSeries:
GSE189563
Mitotic bookmarking by SWI/SNF subunits
Relations
BioProject
PRJNA894705
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Format
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Supplementary file
Size
Download
File type/resource
GSE216661_RAW.tar
9.0 Gb
(http)
(custom)
TAR (of BW, NARROWPEAK)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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