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Series GSE217162 Query DataSets for GSE217162
Status Public on Mar 13, 2023
Title IFN-gamma signature-driven neoadjuvant domatinostat, nivolumab and ipilimumab in stage III melanoma – the DONIMI trial
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Low baseline Interferon gamma (IFNg) response signature is associated with lack of response to neo-adjuvant anti-PD1 + anti-CTLA4 therapy in patients with melanoma. Domatinostat, a class I specific histone deacetylase inhibitor is known to induce IFNg response in patients with advanced stage melanoma. Thus, addition of domatinostat to anti-PD1 + anti-CTLA4 might result in increased response to treatment. However, the effect of this combination therapy on tumor growth has not been evaluated in the pre-clinical setting. We therefore evaluated whether addition of domatinostat results in immune modulation and tumor growth control in the MeVa2.1.dOVA murine melanoma model. We provide pre-clinical evidence to use this combination in melanoma patients.
 
Overall design 8-week-old female C57BL/6 mice were injected s.c with MeVa2.1.dOVA cell line in the right flank. When average tumor volume reached 100 mm3, mice were randomized into treatment arms based on tumor volume. Mice received vehicle control, domatinostat, antiPD1 + anti-CTLA4, or domatinostat + antiPD1 + anti-CTLA4. Domatinostat (20 mg/kg) was administered twice daily via oral gavage. Anti-PD1 (100 ug per mouse) and anti-CTLA4 (50 ug per mouse) were administered two times per week intraperitoneal. Mice were sacrificed after 13 days of treatment and tumors were harvested for RNA seq analysis (n=4 mice per arm were used for RNA seq analysis).
 
Contributor(s) Dimitriadis P, Rao D, Blank CU
Citation(s) 36920329
Submission date Nov 03, 2022
Last update date Apr 25, 2023
Contact name PETROS DIMITRIADIS
E-mail(s) p.dimitriadis@nki.nl, d.rao@nki.nl
Organization name NETHERLANDS CANCER INSTITUTE - NKI
Street address Plesmanlaan 121
City Amsterdam
State/province Noord-Holland
ZIP/Postal code 1066 CX
Country Netherlands
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (16)
GSM6705948 aPD1_aCTLA4 [S4971Nr10]
GSM6705949 aPD1_aCTLA4 [S4971Nr11]
GSM6705950 aPD1_aCTLA4 [S4971Nr12]
Relations
BioProject PRJNA897819

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE217162_RAW.tar 3.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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