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Series GSE218189 Query DataSets for GSE218189
Status Public on Jun 07, 2023
Title Contribution of 6mer seed toxicity to HIV-1 induced cytotoxicity [DISE-36]
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Analysis of RISC bound short (s)RNAs in cells infected with HIV-1 reveals a contribution of 6mer seed toxicity to HIV-1 induced cytopathicity
Overall design Ago protein associated short RNAs were pulled down using a GW182 peptide and subjected to smRNA Seq
Contributor(s) Bartom E, Peter M, Vaidyanathan A
Citation(s) 37310263
Submission date Nov 17, 2022
Last update date Sep 06, 2023
Contact name Marcus Peter
Organization name Northwestern University Feinberg School of Medicine
Street address 303 East Superior Street, Lurie 6-123
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (8)
GSM6736297 HCT116.UT.rep1
GSM6736298 DicerKO.UT.rep1
GSM6736299 HCT116.HIV.rep1
This SubSeries is part of SuperSeries:
GSE218195 Contribution of 6mer seed toxicity to HIV-1 induced cytotoxicity
BioProject PRJNA902715

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE218189_A_rawCounts.DISE-036.txt.gz 3.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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