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Series GSE218189 Query DataSets for GSE218189
Status Public on Jun 07, 2023
Title Contribution of 6mer seed toxicity to HIV-1 induced cytotoxicity [DISE-36]
Organism Homo sapiens
Experiment type Non-coding RNA profiling by high throughput sequencing
Other
Summary Analysis of RISC bound short (s)RNAs in cells infected with HIV-1 reveals a contribution of 6mer seed toxicity to HIV-1 induced cytopathicity
 
Overall design Ago protein associated short RNAs were pulled down using a GW182 peptide and subjected to smRNA Seq
 
Contributor(s) Bartom E, Peter M, Vaidyanathan A
Citation(s) 37310263
Submission date Nov 17, 2022
Last update date Sep 06, 2023
Contact name Marcus Peter
E-mail(s) m-peter@northwestern.edu
Organization name Northwestern University Feinberg School of Medicine
Street address 303 East Superior Street, Lurie 6-123
City Chicago
State/province IL
ZIP/Postal code 60611
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (8)
GSM6736297 HCT116.UT.rep1
GSM6736298 DicerKO.UT.rep1
GSM6736299 HCT116.HIV.rep1
This SubSeries is part of SuperSeries:
GSE218195 Contribution of 6mer seed toxicity to HIV-1 induced cytotoxicity
Relations
BioProject PRJNA902715

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE218189_A_rawCounts.DISE-036.txt.gz 3.2 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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