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Series GSE21823 Query DataSets for GSE21823
Status Public on Apr 01, 2011
Title Nucleosome map of the IMR90 fibroblast cell line
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We produced a map of nucleosome positions in IMR90 by sequencing the ends of MNase-digested chromatin fragments.
Overall design IMR90 cells were grown in culture, about 1E6 cells were isolated and digested using micrococcal nuclease (MNase). Mononucleosomes were gel-selected and fragment ends were sequenced using the Illumina GAIIx sequencing platform.
Contributor(s) Berman BP, Kelly TK, Jones PA, Laird PW
Citation(s) 22960375
Submission date May 13, 2010
Last update date May 15, 2019
Contact name Benjamin Berman
Organization name University of Southern California
Department USC Epigenome Center
Street address 1450 Biggy St. #G511
City Los Angeles
State/province CA
ZIP/Postal code 90033
Country USA
Platforms (1)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (1)
GSM543311 IMR90 MNase-seq
SRA SRP002541
BioProject PRJNA127079

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Supplementary file Size Download File type/resource
GSE21823_RAW.tar 5.8 Gb (http)(custom) TAR (of BAM)
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Processed data provided as supplementary file
Raw data are available in SRA

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