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Series GSE21959 Query DataSets for GSE21959
Status Public on Dec 10, 2010
Title Transcriptional response to hypoxia of normal and rheumatoid arthritis synovial fibroblasts
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Inflammatory tissues are characterized by low oxigen concentrations (hypoxia). These conditions are very different from that usually present in tissue cultures where transcriptomic profiles of human fibroblasts from inflammatory tissues have been previously analysed. The aim of this study was to characterize the changes on gene expression induced by hypoxia in human synovial fibroblasts. We used microarray expression profiling in paired normoxic and hypoxic cultures of healthy and rheumatoid arthritis (RA) synovial fibroblasts (HSF and RASF). Hypoxia induces significant changes on the expression of large groups of genes in both HSF and RASF. The hypoxic and normoxic profiles are also different between both groups. These data demonstrate that hypoxia induces significant changes on gene expression in HSF and RASF and identify differences between RASF and HSF.
Overall design Synovial fibroblasts obtained from 6 patients with rheumatoid arthritis (RASF) and 6 sex and age matched adult healthy donors (HSF) were used. SF cultures were incubated for 22 hours under normoxic or hypoxic (0.5% O2) conditions. Nine experiments per group were performed, single experiments with three SF lines, and duplicated in other three lines per group. All 18 normoxia-hypoxia experiments (36 microarray data) were used for paired analysis of the changes induced by hypoxia in HSF or RASF.
Contributor(s) Del Rey MJ, Izquierdo E, Usategui A, Gonzalo E, Blanco FJ, Acquadro F, Pablos JL
Citation(s) 20848564
Submission date May 21, 2010
Last update date Feb 22, 2018
Contact name Manuel J Del Rey
Phone 0034 91 3908766
Organization name Instituto de Investigaci├│n Hospital 12 de Octubre
Department Grupo de Enfermedades Inflamatorias y Autoinmunes
Street address Avda C├│rdoba s/n
City Madrid
ZIP/Postal code 20041
Country Spain
Platforms (1)
GPL4133 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
Samples (36)
GSM546086 07/967 SANO H
GSM546087 07/967 SANO N
GSM546088 09/940 SANO H
BioProject PRJNA126765

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE21959_RAW.tar 79.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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